PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn147701
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MIKC_MADS
Protein Properties Length: 220aa    MW: 24338 Da    PI: 9.755
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn147701genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.47e-271059251
                ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
      SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                ri+n++ rqvtfskRr+g+lKKA+EL +LCdaev ++ifsstgklyey+s
  Achn147701 10 RIDNTTSRQVTFSKRRTGLLKKAKELEILCDAEVGLVIFSSTGKLYEYAS 59
                8***********************************************86 PP
2K-box52.71.8e-18591223497
       K-box  34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                 ++R+l+Ge+L  L++k+Lq+Le+qLe sl+ +R +K++l++++  el kk + +++en++L kk
  Achn147701  59 SNRKLMGEELYGLTVKDLQNLENQLEMSLRGVRMTKENLMHQENVELYKKVNLVRRENMELYKK 122
                 57***********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.7E-37160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006631.16161IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.53E-27264IPR002100Transcription factor, MADS-box
CDDcd002652.18E-36260No hitNo description
PRINTSPR004042.8E-28323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.8E-282338IPR002100Transcription factor, MADS-box
PROSITE profilePS512979.47637129IPR002487Transcription factor, K-box
PRINTSPR004042.8E-283859IPR002100Transcription factor, MADS-box
PfamPF014867.1E-1758122IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MGRGKIVIRR IDNTTSRQVT FSKRRTGLLK KAKELEILCD AEVGLVIFSS TGKLYEYASN  60
RKLMGEELYG LTVKDLQNLE NQLEMSLRGV RMTKENLMHQ ENVELYKKVN LVRRENMELY  120
KKSTPSTTAR PFSAATTLSE HPQMSTASAA EDSNPLLKDF DFPPFDAIAA EHVRPGIRAL  180
LKKLVRIRIC IYDRRADVAE AGGAAGEDCG SASGGLGGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-18159159MEF2C
5f28_B2e-18159159MEF2C
5f28_C2e-18159159MEF2C
5f28_D2e-18159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028068986.11e-62MADS-box transcription factor 23-like isoform X3
SwissprotQ6EP498e-51MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A1L1WKY84e-62A0A1L1WKY8_9ASPA; MADS6
STRINGVIT_18s0001g07900.t012e-57(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA6792056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.14e-53AGAMOUS-like 21
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]