PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn147941
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 302aa    MW: 33893.4 Da    PI: 5.9944
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn147941genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY697.1e-22121183159
                 ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSST.TEEEEEEES--SS- CS
        WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedp.kvveitYegeHnhe 59 
                 ++Dg++WrKYGqK++ +++f+r Y+rCt++   gC ++k+v++ +e+p ++ ++tY g+H+++
  Achn147941 121 MEDGHAWRKYGQKQILNAKFSRCYFRCTHKydqGCLATKQVQKIQEEPhQMYQTTYFGHHTCT 183
                 58***************************99999*********999873689*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081115.181116180IPR003657WRKY domain
Gene3DG3DSA:2.20.25.802.1E-21119183IPR003657WRKY domain
SuperFamilySSF1182906.41E-21119183IPR003657WRKY domain
SMARTSM007741.9E-34121184IPR003657WRKY domain
PfamPF031063.9E-22122182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MGILRPEKLC ANRKRLMEEL VMGQDKAAQL RNLLEKPTGP GDSGPASAEG LLVKILGSFC  60
TSLSLLKCAC DSCELCQIQS SFQVGSEDSG ENSKQSAAKE RRGCYKRRKT LDAWIKILPT  120
MEDGHAWRKY GQKQILNAKF SRCYFRCTHK YDQGCLATKQ VQKIQEEPHQ MYQTTYFGHH  180
TCTNTLKISQ HTLDYDPPQP YLLSFQSNNI TSDVQDHHPS CPISVKTECN KEEIECNLSG  240
KLPVAAVAAE SNMWADLLTM RSDHEDVISS TTTTISHDLE MDFLIDECVD FQNDFCFGEG  300
E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A1e-19117182468OsWRKY45
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in senescence, biotic and abiotic stress responses by modulating various phytohormones signaling pathways (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Required for the resistance (R) gene Mi-1-mediated resistance to potato aphid (e.g. M.euphorbiae) and root-knot nematode (e.g. M.javanica) (PubMed:21898085). {ECO:0000250|UniProtKB:Q9LY00, ECO:0000250|UniProtKB:Q9SUP6, ECO:0000269|PubMed:21898085}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in response to potato aphid (e.g. M.euphorbiae) infestation and root-knot nematode (e.g. M.javanica) inoculation. Up-regulated by salicylic acid (SA) and suppressed by methyl jasmonate (MeJA). {ECO:0000269|PubMed:21898085}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028079122.12e-86WRKY DNA-binding transcription factor 70-like
SwissprotK4BIZ99e-48WRK70_SOLLC; WRKY DNA-binding transcription factor 70
TrEMBLA0A2R6PLQ30.0A0A2R6PLQ3_ACTCH; WRKY transcription factor 70
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA61992233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.13e-40WRKY DNA-binding protein 70
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]