PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn148371
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 188aa    MW: 20729.2 Da    PI: 8.4787
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn148371genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.63e-291575259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59
                dDg++WrKYGqKe+ gs+fpr+YYrCt++   +Cp+kk+v+r ++dp+++++tY+g+H+++
  Achn148371 15 DDGFTWRKYGQKEILGSRFPRGYYRCTHQkqyHCPAKKQVQRLNNDPTTFQVTYRGDHTCH 75
                8***************************99999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.5E-281075IPR003657WRKY domain
SuperFamilySSF1182906.41E-261176IPR003657WRKY domain
SMARTSM007745.4E-361476IPR003657WRKY domain
PfamPF031064.0E-261575IPR003657WRKY domain
PROSITE profilePS5081121.8381577IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MVRAPRMGNT EIPPDDGFTW RKYGQKEILG SRFPRGYYRC THQKQYHCPA KKQVQRLNND  60
PTTFQVTYRG DHTCHLSSTA PSAPPISAQL SPAISIQQPT TTHSPPPQPI SSTLGHWLSM  120
DIQPMAGDSS AGAGPSRVRF GRDHVDYQLP VTDLADAMFN SGSSSNNSID LIFSPMEEKW  180
DAGEKKN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A5e-201574968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016577154.12e-71PREDICTED: WRKY transcription factor 55-like
SwissprotQ9SHB52e-47WRK55_ARATH; WRKY transcription factor 55
TrEMBLA0A2R6PMG81e-138A0A2R6PMG8_ACTCH; WRKY transcription factor
STRINGPGSC0003DMT4000226381e-72(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA92801824
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.16e-44WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]