PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn149691
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 217aa    MW: 24549.6 Da    PI: 8.3827
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn149691genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.82.1e-1958110456
                 -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                 + ++t++qle Le+ F+++ ++  +++ +LA++lgL  rqV vWFqNrRa++k
  Achn149691  58 KKRLTSQQLESLESSFQEEIKLEPDRKMRLARELGLAPRQVAVWFQNRRARWK 110
                 5679************************************************9 PP
2HD-ZIP_I/II116.81.3e-3758148393
  HD-ZIP_I/II   3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                  k+rl+++q+++LE+sF+ee kLep+rK++lareLgl prqvavWFqnrRAR+k+kqlE+ y+aLkr+yd++++e+ +L++ev +L++ lk+
   Achn149691  58 KKRLTSQQLESLESSFQEEIKLEPDRKMRLARELGLAPRQVAVWFQNRRARWKAKQLERLYDALKREYDSVSREKLKLQEEVLALKAMLKD 148
                  99************************************************************************************98875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.99E-1950114IPR009057Homeodomain-like
PROSITE profilePS5007117.10352112IPR001356Homeobox domain
SMARTSM003891.6E-1654116IPR001356Homeobox domain
CDDcd000864.06E-1556113No hitNo description
PfamPF000465.8E-1758110IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-2059119IPR009057Homeodomain-like
PRINTSPR000318.2E-68392IPR000047Helix-turn-helix motif
PROSITE patternPS00027087110IPR017970Homeobox, conserved site
PRINTSPR000318.2E-692108IPR000047Helix-turn-helix motif
PfamPF021832.3E-7112146IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MDWNGNIRPA FVSWPESSLS FLYNYNYEHY PGQEPKYPAV GPQAHAAATG SHCGEKLKKR  60
LTSQQLESLE SSFQEEIKLE PDRKMRLARE LGLAPRQVAV WFQNRRARWK AKQLERLYDA  120
LKREYDSVSR EKLKLQEEVL ALKAMLKDQT KRNQLVSTEI SGDETAESTS VGNQSSGRLG  180
GTSHQQMVEG GDVFSVDNYN PVVVPPYWGT VLPSYP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1104112RRARWKAKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028079863.13e-97putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A2R6PXK81e-131A0A2R6PXK8_ACTCH; Homeobox-leucine zipper protein like
STRINGVIT_08s0007g04200.t016e-86(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.11e-38homeobox 51