PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn150051
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family B3
Protein Properties Length: 209aa    MW: 24445.2 Da    PI: 8.7012
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn150051genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3376.2e-1298185798
                 .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-..SSSEE..EEEEE- CS
          B3   7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld..grsefelvvkvfr 98 
                 +s+   + +lv+pkk  +      ++s+  ++ +  g++We+ +   + s+   + ++Wk+F+ +n+Lk gD +vF+ +  ++s+ +++v+++r
  Achn150051  98 KSHLKPLYQLVFPKKMYSLL----PCSRVPVILTYCGKKWEMVY--YGDSNPKRFDRNWKNFAIDNDLKLGDACVFEIVeiSSSNLKFRVQILR 185
                 56666666777777766222....245555667778********..555555559**********************66323367777777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.8E-1488185IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.47E-1788185IPR015300DNA-binding pseudobarrel domain
CDDcd100172.67E-1690185No hitNo description
SMARTSM010190.002692187IPR003340B3 DNA binding domain
PROSITE profilePS5086311.58992187IPR003340B3 DNA binding domain
PfamPF023621.7E-1094185IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MRCLVVERER KRWKENPRLD NCRDTHKMEP LSPNNEVEHP QMDKPPARTV ENLSTKAVEA  60
IQRDPKTKKL LDPKTTEFED DEFWPLSGKP YFHVFVVKSH LKPLYQLVFP KKMYSLLPCS  120
RVPVILTYCG KKWEMVYYGD SNPKRFDRNW KNFAIDNDLK LGDACVFEIV EISSSNLKFR  180
VQILRGEFPS QLMERVKGEA SDNPIIVD*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028100303.15e-76B3 domain-containing protein Os04g0386900-like
TrEMBLA0A2R6RD191e-130A0A2R6RD19_ACTCH; B3 domain-containing protein
STRINGEMJ221392e-48(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA18192154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-09B3 family protein