PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn150591
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TALE
Protein Properties Length: 258aa    MW: 29223.1 Da    PI: 5.4559
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn150591genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.21.5e-091852192155
                 HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 k +yps++++  LA+++gL+++q+ +WF N+R ++
  Achn150591 185 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 219
                 569*****************************885 PP
2ELK41.72.4e-14139160122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK qLlrKYsgyLgsLkqEF+
  Achn150591 139 ELKGQLLRKYSGYLGSLKQEFM 160
                 9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012568.9E-2752103IPR005541KNOX2
PfamPF037917.6E-2256102IPR005541KNOX2
SMARTSM011882.8E-8139160IPR005539ELK domain
PROSITE profilePS5121311.174139159IPR005539ELK domain
PfamPF037893.9E-11139160IPR005539ELK domain
PROSITE profilePS5007112.989159222IPR001356Homeobox domain
SuperFamilySSF466891.03E-19161236IPR009057Homeodomain-like
SMARTSM003897.4E-13161226IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-28164224IPR009057Homeodomain-like
CDDcd000862.91E-12171223No hitNo description
PfamPF059204.0E-17179218IPR008422Homeobox KN domain
PROSITE patternPS000270197220IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MAEPEAQLAK SLLCHTYGLE KSTRTKVLEI GAPPEVVARL EEACSSAAGV GRAGCVGEDP  60
ALDQFMEAYC EMLTKYEQEL SNPFKEAMVF LSRIECQFKS LTVASSDSAC GEGLDRNGSS  120
EEEADVNNNF IDPQAEDREL KGQLLRKYSG YLGSLKQEFM KKRKKGKLPK EARQQLLDWW  180
SRHYKWPYPS ESQKLALAES TGLDQKQINN WFINQRKRHW KPSEDMQFVV MDATHPHYYM  240
DNVLGNPFPM DISPTLL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1154163LKQEFMKKRK
2160164KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021889118.11e-151homeobox protein SBH1
SwissprotP466081e-133HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA0A2R6RB921e-170A0A2R6RB92_ACTCH; Homeobox protein like isoform 1
STRINGVIT_10s0116g00190.t011e-147(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68352433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-127KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]