PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn153231
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 240aa    MW: 26582.5 Da    PI: 8.6822
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn153231genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.76.1e-1873123256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr +  +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++ge
  Achn153231  73 LYHGVRMRN-WGKWVSEIREPRK---QSRIWLGTYPTAEMAARAHDVAARAIKGE 123
                 59****998.**********843...5***********************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.84E-2972132No hitNo description
SuperFamilySSF541718.5E-2173131IPR016177DNA-binding domain
SMARTSM003805.6E-3573136IPR001471AP2/ERF domain
PROSITE profilePS5103222.0173130IPR001471AP2/ERF domain
PfamPF008475.2E-1273123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.9E-3174131IPR001471AP2/ERF domain
PRINTSPR003671.3E-97485IPR001471AP2/ERF domain
PRINTSPR003671.3E-996112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MEEQINIESL AQDYLPSSPT TTTSTSTSFS SISDGLKSCK AQKGLKRVLQ EAKNGNETRK  60
RHKIAGDCKH PTLYHGVRMR NWGKWVSEIR EPRKQSRIWL GTYPTAEMAA RAHDVAARAI  120
KGESAHLNFP ELAHKLPRPA TASPKDVQAA AAQAAAATFS SQADEVRPSR AKLSSSRSST  180
TLSLENAQDS SNSPSIRNDE DTFFDLPDLD STNYHALSWQ LTEADSSFRL NERFLWEYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-15741301572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028051115.15e-88ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ72e-55ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA0A2R6RCU91e-143A0A2R6RCU9_ACTCH; Ethylene-responsive transcription factor
STRINGXP_009613551.13e-68(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.19e-41ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]