PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn153601
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family LBD
Protein Properties Length: 122aa    MW: 13604.3 Da    PI: 3.7722
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn153601genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26059.78e-1986345100
      DUF260  45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
                    +lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+aela++++e
  Achn153601   8 ASVELPESQRADAVSSMVYEANARIRDPVYGCAGAICQLQKQVSELQAELAKTQAE 63 
                 556789**********************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089111.468164IPR004883Lateral organ boundaries, LOB
PfamPF031955.6E-171061IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 122 aa     Download sequence    Send to blast
MLSQFVAASV ELPESQRADA VSSMVYEANA RIRDPVYGCA GAICQLQKQV SELQAELAKT  60
QAELLTMQCQ QNNLMALFCM EASQISQEPI FPQHQEDEQE QVLYDNAIFS LDDANWETLW  120
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A9e-18117158118LOB family transfactor Ramosa2.1
5ly0_B9e-18117158118LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028100189.12e-48LOB domain-containing protein 1-like
SwissprotQ9SK089e-29LBD11_ARATH; LOB domain-containing protein 11
TrEMBLA0A2R6RTS52e-74A0A2R6RTS5_ACTCH; LOB domain-containing protein
STRINGEOY185487e-43(Theobroma cacao)
STRINGSolyc11g072470.1.13e-43(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28500.14e-31LOB domain-containing protein 11