PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn154251
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family Trihelix
Protein Properties Length: 206aa    MW: 24104.2 Da    PI: 8.6648
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn154251genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix41.63.2e-131473887
    trihelix 38 mrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                mre+g++rs++qCk+kw+nl +ryk + ++e ++    ++++p++++lea
  Achn154251  1 MREKGYNRSAEQCKSKWKNLVTRYKGCGNMELEG---MRQQFPFYNELEA 47
                89******************************97...56679*****985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.1E-11148No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MREKGYNRSA EQCKSKWKNL VTRYKGCGNM ELEGMRQQFP FYNELEAIFA ARMERMLWIE  60
AEGGSSSGTK NKGVAIASDN EDDNEESDRD KAGSRKKKGK VHKSGNSPSS GGNISVLKET  120
LEEFMKQQMQ IEMEWLKAYK AKEEERRLRE MEWRQTMEAL ESERIVMERG WRQRDEQRRM  180
IEEARADNRD ALISALLNKF RREDM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GTTAC-3'. {ECO:0000269|PubMed:15044016}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011095020.11e-75trihelix transcription factor GT-3b
RefseqXP_020553261.11e-75trihelix transcription factor GT-3b
SwissprotQ9SDW07e-42TGT3A_ARATH; Trihelix transcription factor GT-3a
TrEMBLA0A2R6RXC91e-81A0A2R6RXC9_ACTCH; Trihelix transcription factor GT-3b like
STRINGXP_010264622.11e-72(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA41872343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.17e-35Trihelix family protein