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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Achn154701 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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| Family | G2-like | ||||||||
| Protein Properties | Length: 172aa MW: 19194.5 Da PI: 6.9473 | ||||||||
| Description | G2-like family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 85.7 | 4.7e-27 | 23 | 73 | 1 | 51 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51
k+rl+Wt+eLH+ F +av+qLGG+++AtPk il++m+++gLt++hvkSHLQ
Achn154701 23 KERLKWTQELHDLFEKAVNQLGGADRATPKGILKAMGIQGLTIYHVKSHLQ 73
68************************************************9 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:1.10.10.60 | 1.4E-24 | 21 | 73 | IPR009057 | Homeodomain-like |
| SuperFamily | SSF46689 | 3.05E-14 | 22 | 73 | IPR009057 | Homeodomain-like |
| TIGRFAMs | TIGR01557 | 1.7E-20 | 23 | 73 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 9.4E-9 | 25 | 73 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 172 aa Download sequence Send to blast |
MPRRVAQTPD SEMGSSRSDG SGKERLKWTQ ELHDLFEKAV NQLGGADRAT PKGILKAMGI 60 QGLTIYHVKS HLQLPSLCED SESNAKEFES DSEIDKTEVR SEEEFRAPKS PKRARVAENV 120 LLPRYKVASL DFQSYNQSML ARVVHPSCET SFPWSVAASQ SPFMPSLYNY N* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 6j4k_A | 3e-21 | 22 | 73 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j4k_B | 3e-21 | 22 | 73 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_A | 3e-21 | 22 | 73 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_C | 3e-21 | 22 | 73 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_D | 3e-21 | 22 | 73 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_F | 3e-21 | 22 | 73 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_H | 3e-21 | 22 | 73 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| 6j5b_J | 3e-21 | 22 | 73 | 1 | 52 | Protein PHOSPHATE STARVATION RESPONSE 1 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015580205.1 | 5e-44 | myb family transcription factor PHL5 | ||||
| TrEMBL | A0A2R6RRS3 | 3e-65 | A0A2R6RRS3_ACTCH; Protein PHOSPHATE STARVATION RESPONSE like | ||||
| STRING | XP_002528084.1 | 7e-47 | (Ricinus communis) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA10101 | 20 | 26 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G01060.1 | 7e-24 | G2-like family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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