PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn154831
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 349aa    MW: 40777.5 Da    PI: 7.4945
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn154831genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.32.1e-1729109181
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkl 81 
                 +fYn Y + +GFs+r+ +s+ks+++g  + r+fvCsk+g+r ++k+     +++++etrt+C+ ++ + +++ ++kw+v++ 
  Achn154831  29 EFYNVYRRVMGFSIRICYSTKSQKDGVLIGRKFVCSKQGTRGKDKRC-LVVEHPQKETRTKCDENMSILLNReTSKWVVASH 109
                 6******************************************9998.888999***************99999*****875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1329109IPR004330FAR1 DNA binding domain
PfamPF105511.6E-20196281IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MNVKENEHLI EDYTPCLQKE FELEKAAYEF YNVYRRVMGF SIRICYSTKS QKDGVLIGRK  60
FVCSKQGTRG KDKRCLVVEH PQKETRTKCD ENMSILLNRE TSKWVVASHD LLSAQAGGKE  120
FLGFTREDQK NYLRGRRQRS LEYGESGALL GYFQKQASKN LSFYYAVQLD FDEMITNIFC  180
ADHEMITDYG FFGDAISFDT TFRTNKECRP CYRMTTIFGV ALLYDETIES FEWLFNTFLH  240
AMSGKKPTTI FTDQDAAMAK AISRVLSDVT HGLCTFHLNQ NALKHLGHLF KSSSIFGREL  300
NTCIFWYEYE QELVEAWDAL VKKYDLHDNA WMKKTWEIRE KWAHVYMK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028093247.11e-154protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A3Q7Y2611e-110A0A3Q7Y261_CICAR; protein FAR1-RELATED SEQUENCE 5-like
STRINGXP_004503202.11e-110(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30211740
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.17e-61FAR1-related sequence 5