PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn155211
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family YABBY
Protein Properties Length: 73aa    MW: 7935.12 Da    PI: 9.7613
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn155211genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY27.69.3e-09124124
       YABBY  1 advfssseqvCyvqCnfCntilav 24
                +d++  +eq+Cyv+CnfCnt+la 
  Achn155211  1 MDLVPPPEQLCYVRCNFCNTVLAG 24
                578899****************85 PP
2YABBY32.62.6e-10347296134
       YABBY  96 vsseklsenedeevprvppvirPPekrqrvPsaynrfik 134
                  ss++ s++++  +p++  +++PPek+ r Psaynrf+k
  Achn155211  34 SSSSSSSTSSEPVSPKASFAVKPPEKKHRLPSAYNRFMK 72 
                 3333346788889999999******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.0E-5624IPR006780YABBY protein
PfamPF046905.5E-83672IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 73 aa     Download sequence    Send to blast
MDLVPPPEQL CYVRCNFCNT VLAGFVNEIK KGQSSSSSSS TSSEPVSPKA SFAVKPPEKK  60
HRLPSAYNRF MK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019460408.12e-24PREDICTED: protein CRABS CLAW isoform X2
TrEMBLA0A2R6QD862e-29A0A2R6QD86_ACTCH; Protein DROOPING LEAF like
STRINGVIT_01s0011g00140.t011e-23(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52102339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69180.12e-07YABBY family protein