PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn155631
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 427aa    MW: 48860.2 Da    PI: 4.7157
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn155631genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind97.31.5e-30721942103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTT.....................XTT CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksks.....................kek 77 
                   Flkk+++++ed+e++++isw+++++sfvv+d+++f++++Lpk+Fkh+nf+SF+RQLn+Y  +++ +   ++++                     +++
    Achn155631  72 FLKKTFRMVEDPETDKIISWTDSQKSFVVWDHHQFSSSLLPKHFKHNNFSSFIRQLNTYVITNLPQFLPNNREiqakitwvlleldfsfgfkkiDSD 168
                   9**********************************************************9999887666655566889999999988887765449* PP

                   SEEEEESXXXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind  78 iweFkhksFkkgkkellekikrkkse 103
                    weF+++ F+ gk+ ll++ikrkk++
    Achn155631 169 RWEFANEGFQGGKEFLLKNIKRKKNN 194
                   ***********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3368191IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467855.44E-2868191IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-4568191IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.9E-2772191IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-147295IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-14110122IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.1E-14123135IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MMETLTIRQE KIVIIDDAGD GRGSLTVEKK SVELVAVKED PVIDLLDDDY GFGNCSLPKP  60
MEGLHEIGPP PFLKKTFRMV EDPETDKIIS WTDSQKSFVV WDHHQFSSSL LPKHFKHNNF  120
SSFIRQLNTY VITNLPQFLP NNREIQAKIT WVLLELDFSF GFKKIDSDRW EFANEGFQGG  180
KEFLLKNIKR KKNNSQNLLQ QRAIMRPLPD SAQSGTETEL EKLRTDGNKM KTEILKLKQQ  240
HESTVNHLAM FMDRIKTTES KQQQMFVFLD KALASPVFFS QFLQLLRQKR ELCNGQIAKK  300
RRLEAPKSND NSVGDQNENE RSQNQEELAT IESDMKTLLC ASVDDEGSPS TEKGNDNATP  360
ESVSPDWNSE GFIMWDKLLD DALIFEDEEG FGQDQSKIVL ELENLIKSLE WRGEVGDLEE  420
QANVFC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-197019127129Heat shock factor protein 1
5d5v_B6e-197019127129Heat shock factor protein 1
5d5v_D6e-197019127129Heat shock factor protein 1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028060152.11e-126heat shock factor protein HSF30-like
TrEMBLA0A2R6Q5320.0A0A2R6Q532_ACTCH; Heat shock factor protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA56812235
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26150.14e-74heat shock transcription factor A2