PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn155941
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YA
Protein Properties Length: 259aa    MW: 28798.7 Da    PI: 10.6271
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn155941genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA103.32.2e-32128184158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 d p+YVNaKQy++Il+RRq+Rakle+++kl  k+r+pylheSRh+hAl+R RgsgGrF
  Achn155941 128 DGPIYVNAKQYHGILRRRQMRAKLEAQNKL-VKNRRPYLHESRHQHALNRVRGSGGRF 184
                 57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-36126187IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.384127187IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.2E-27130184IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.5E-24130152IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860132152IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.5E-24161184IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MPNFIPTVVF VAPHLNRSQR YRQLSYLYNN RFIQLSLSII HSVLTTIPLQ FEYGRNSNVL  60
NISKTVLTGG DGSYGKQVEG QMKPVFFTGH PNSVTNPSEI DFSQSITQPQ MVGMAPARVA  120
LPLDLAEDGP IYVNAKQYHG ILRRRQMRAK LEAQNKLVKN RRPYLHESRH QHALNRVRGS  180
GGRFLSKKKL QQADPNPGGR QKGSDFEVDQ SETGKYCGST NSSFGITSVT NSDAIFRQPD  240
CGFSTISPHL GVRAPVVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A6e-21130189463NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021276874.15e-70nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_021276875.15e-70nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_021276876.15e-70nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_021276877.15e-70nuclear transcription factor Y subunit A-3-like isoform X1
RefseqXP_021276878.12e-70nuclear transcription factor Y subunit A-7-like isoform X2
SwissprotQ93ZH23e-39NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A2R6Q5541e-131A0A2R6Q554_ACTCH; Nuclear transcription factor Y subunit A-3 like
STRINGEOY303241e-68(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50092338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.11e-41nuclear factor Y, subunit A3