PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn156111

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

LBD

Protein Properties

Length: 165aa MW: 18647.4 Da PI: 6.9019

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn156111	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91.1	1.3e-28	12	111	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaC+++r++C++ C+l++yfp+++++ f vhkl+G +n lk++ ++p + ++++++l++eA++r + Pv G++++ ++ ++++ ++el+++k+ Achn156111 12 ACAACRHQRKRCEPYCPLRKYFPSNKEEVFLSVHKLYGLNNFLKIIGSVPFHLEHKTAQTLIFEAKVRSQFPVLGSLELQAWIKARIMECEKELEVVKK 110 7**********************************************************************************************9998 PP DUF260 100 e 100 e Achn156111 111 E 111 7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.372	11	112	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.1E-27	12	109	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MQGGGVNINA VACAACRHQR KRCEPYCPLR KYFPSNKEEV FLSVHKLYGL NNFLKIIGSV 60 PFHLEHKTAQ TLIFEAKVRS QFPVLGSLEL QAWIKARIME CEKELEVVKK ELAVQEEKKK 120 SQDTIETNLT LGTNFELKSR GKQPMVCDDD NNEEEMEGEA TSSN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	5e-15	13	112	12	111	LOB family transfactor Ramosa2.1
5ly0_B	5e-15	13	112	12	111	LOB family transfactor Ramosa2.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027067307.1	1e-27	LOB domain-containing protein 24-like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2866	17	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06280.1	5e-17	LOB domain-containing protein 2