PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn156881

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

G2-like

Protein Properties

Length: 222aa MW: 25643.4 Da PI: 7.7634

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn156881	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	90.5	1.5e-28	82	131	2	51
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQ 51 prlrWtp+LH++Fv+a+e+LGG+ekAtPk il+lm+vkgL ++hvkSHLQ Achn156881 82 PRLRWTPDLHHSFVRAIERLGGQEKATPKLILQLMDVKGLGIAHVKSHLQ 131 8************************************************* PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-26	78	131	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.66E-12	80	135	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.8E-19	82	131	IPR006447	Myb domain, plants
Pfam	PF00249	2.0E-5	83	131	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MSEGMDIQDD KKSETNEEHL KNTSSSVSSQ KLSSFDLNEE ANNGEDSDCN KEDDLGNNNS 60 TISREGNERK AITRQYVRSK MPRLRWTPDL HHSFVRAIER LGGQEKATPK LILQLMDVKG 120 LGIAHVKSHL QPSNWNYRNN TTRIWQFQSY LQDTKTVSNT LERKFNSPFS FQEKRLKREE 180 RLPDLKLRLS ENFENNEERP TYGKNMQEIN TVLSLSLSPH S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	1e-15	83	131	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	1e-15	83	131	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	1e-15	83	131	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-15	83	131	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-15	83	131	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-15	83	131	3	51	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	1e-15	83	131	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	1e-15	83	131	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	1e-15	83	131	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	1e-15	83	131	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	1e-15	83	131	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	1e-15	83	131	4	52	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028107181.1	1e-52	two-component response regulator ARR12-like
TrEMBL	A0A2R6QAB8	5e-79	A0A2R6QAB8_ACTCH; Myb family transcription factor
STRING	XP_007148039.1	4e-42	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5433	22	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	3e-30	G2-like family protein