PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn157941
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ERF
Protein Properties Length: 252aa    MW: 26736.7 Da    PI: 4.6998
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn157941genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP248.81.8e-1587134355
         AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                 ++GVr  +++g+Wv+eIr+p   gk +r++lg++ t+e Aa+a++ a+++l+g
  Achn157941  87 FRGVR--SRSGKWVSEIREP---GKATRIWLGTHPTPEAAAAAYDVAALALKG 134
                 89**6..678*********8...545************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.105.9E-2686144IPR001471AP2/ERF domain
CDDcd000185.36E-1786144No hitNo description
SuperFamilySSF541713.66E-1786144IPR016177DNA-binding domain
PROSITE profilePS5103219.53386142IPR001471AP2/ERF domain
SMARTSM003801.8E-2686150IPR001471AP2/ERF domain
PRINTSPR003671.6E-68798IPR001471AP2/ERF domain
PfamPF008471.5E-887134IPR001471AP2/ERF domain
PRINTSPR003671.6E-6124144IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MANPSNVRQS DPKLTSESDP SRPSLSIVRP DDYLPPNRPN MSPLGLSSDP SSGPNIFPFT  60
ISCEESSPKH PQSPTTAASP SPRHRIFRGV RSRSGKWVSE IREPGKATRI WLGTHPTPEA  120
AAAAYDVAAL ALKGPDAALN FPDSILLYPV PASSAACDVR AAAAAAAAAR HSKPVSAGES  180
SEHVRVENEE KGEGETTSGE EFIDEEAIFD MPNMLVDMAE GMLLSPPRMK SPPCDDDSAE  240
SSGGDNLWSY R*
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGQ8698520.0GQ869852.1 Actinidia deliciosa ethylene response factor 1 (ERF1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033804.12e-61PREDICTED: ethylene-responsive transcription factor ERF026-like
SwissprotQ9FJ904e-51ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A2R6RQU01e-180A0A2R6RQU0_ACTCH; Ethylene-responsive transcription factor
STRINGVIT_16s0100g00400.t011e-58(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55322110
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.13e-39ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]