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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Achn158001 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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| Family | bHLH | ||||||||
| Protein Properties | Length: 1181aa MW: 131738 Da PI: 9.1759 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 26.4 | 1.2e-08 | 734 | 785 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
HLH 2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
+ +h +Er+RR+++ s Lr++lP +++ s ++ + v+YIk+L+
Achn158001 734 KIMHRDMERQRRQEMASLHVSLRSILPFeY---IKGRRSVSDHIHESVNYIKHLE 785
779*************************77...9*******************96 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Gene3D | G3DSA:2.60.120.200 | 5.0E-8 | 21 | 76 | IPR013320 | Concanavalin A-like lectin/glucanase domain |
| SuperFamily | SSF56112 | 2.48E-64 | 48 | 218 | IPR011009 | Protein kinase-like domain |
| PROSITE profile | PS50011 | 28.937 | 68 | 597 | IPR000719 | Protein kinase domain |
| SMART | SM00220 | 4.4E-30 | 68 | 588 | IPR000719 | Protein kinase domain |
| Pfam | PF07714 | 9.7E-30 | 72 | 224 | IPR001245 | Serine-threonine/tyrosine-protein kinase catalytic domain |
| PROSITE pattern | PS00107 | 0 | 74 | 97 | IPR017441 | Protein kinase, ATP binding site |
| Gene3D | G3DSA:3.30.200.20 | 3.0E-17 | 77 | 148 | No hit | No description |
| Gene3D | G3DSA:1.10.510.10 | 6.7E-43 | 149 | 223 | No hit | No description |
| PROSITE pattern | PS00108 | 0 | 192 | 204 | IPR008271 | Serine/threonine-protein kinase, active site |
| SuperFamily | SSF56112 | 2.48E-64 | 464 | 612 | IPR011009 | Protein kinase-like domain |
| Gene3D | G3DSA:1.10.510.10 | 6.7E-43 | 469 | 616 | No hit | No description |
| Pfam | PF00069 | 8.0E-9 | 472 | 585 | IPR000719 | Protein kinase domain |
| CDD | cd00083 | 2.73E-7 | 730 | 789 | No hit | No description |
| SuperFamily | SSF47459 | 3.4E-10 | 730 | 800 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 12.119 | 732 | 784 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 8.1E-6 | 734 | 785 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene3D | G3DSA:4.10.280.10 | 4.0E-7 | 736 | 801 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50011 | 31.51 | 848 | 1126 | IPR000719 | Protein kinase domain |
| SMART | SM00220 | 1.0E-15 | 848 | 1126 | IPR000719 | Protein kinase domain |
| Pfam | PF00069 | 6.3E-35 | 875 | 1124 | IPR000719 | Protein kinase domain |
| SuperFamily | SSF56112 | 1.75E-63 | 878 | 1133 | IPR011009 | Protein kinase-like domain |
| Gene3D | G3DSA:3.30.200.20 | 1.4E-11 | 878 | 933 | No hit | No description |
| Gene3D | G3DSA:1.10.510.10 | 1.6E-40 | 938 | 1149 | No hit | No description |
| PROSITE pattern | PS00108 | 0 | 977 | 989 | IPR008271 | Serine/threonine-protein kinase, active site |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006468 | Biological Process | protein phosphorylation | ||||
| GO:0004672 | Molecular Function | protein kinase activity | ||||
| GO:0005524 | Molecular Function | ATP binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 1181 aa Download sequence Send to blast |
MPARPPPPEP PSSPPDHRVL LPPLAAFSLL LLLAACFPKL SRKRTVPSDS KPPRRLSYSA 60 LRRATSSFST DLRLGHGGFG SVYRGTLADP PLEVAVKVMD AGSLQGEREF QNELLIAGKI 120 DSDHVVSVVG FSSDRKRRRM VLVYELMSNG SLQDCLLHRK CVELAEWKKR FAIAIDIAKG 180 MEYLHHCCSP PVIHGDIKPS NILLDSNFNA KIGDFGLARL KSEDHCVIQV VNDGLEGKKD 240 NNSSEPEENE SVLNSGPNQS PESFVRVSVA ETSPETEAVN DGSVKKSERR LKSHSGKEWW 300 WKQDNGSGKS GVAKDYVMEW IGNEIKSQKP KNEWIGDSSS SGAIGKSGRK KSRKGLDWWK 360 AMDGEKNAKR EKRRPAREWW KEEYCEELAK KKKKKKKKQG STSDVEDGEN WWPVDEDLNV 420 DKKKSKSRSR SRGSWGSVDW WLDGLSGELW RARGHSHDSS GGETPKSGGV SSTQSMRGTV 480 CYIAPEYGGG GELSEKCDVY SFGVLLLVLI AGRRPLQVNN SPLSEFKRAN LLSWARHLAR 540 TRKLLDLVDE AIQSLDREQA MLCITIALLC LQKLPARRPS MKEVVGMLTG ELDSPQLPVE 600 FSPSPPSHVP FKSRKKLVSP GCKWVEQCFI GFGLMFGYSP SCSSKIQGSW PPEGQGVSGL 660 SYATLVLGLL ALCLVTPPPG LLKAGVDHEL LFEIRKDPIA GHASLESTNL TTNTTKKDGE 720 NRLQSMNYSN KKQKIMHRDM ERQRRQEMAS LHVSLRSILP FEYIKGRRSV SDHIHESVNY 780 IKHLEKKIKE LGMKREKLKK MTNSSDPKET RESSCSCFSN SVKVSSCHGG VEILISSGFS 840 DEGFALSRVL EALIEEGIDV VSYFSTQVND RLLHTIKSEI AVKRLKAMTA KAEMEFAVEV 900 EILGRVRHKN LLGLRGFYAG GDERLIVYDF MPNHSLITHL HGQLAADCLL DWPRRMNIAV 960 GSAEGLAYLH HEANPHIIHR DIKASNVILD SEFQAKVADF GFAKLIPDGV SHLTTRVKGT 1020 LGYLAPEYAM WGKVSESCDV YSFGILLLEI ISAKKPLEKL PGGIKRDIVQ WAKPYVQKGD 1080 FEHIADPRLK GKYDIIQLRK VVVIAMRCAD GNPENRPSML QVVEWLKDSV GRRTKRVQLV 1140 KDAASEEDDD DEGDGDITDY EGAEMEKSTK RMVRKETRMR * |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 3tl8_A | 2e-58 | 46 | 1127 | 12 | 317 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 |
| 3tl8_D | 2e-58 | 46 | 1127 | 12 | 317 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 |
| 3tl8_G | 2e-58 | 46 | 1127 | 12 | 317 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 |
| 3tl8_H | 2e-58 | 46 | 1127 | 12 | 317 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 |
| 3uim_A | 1e-58 | 46 | 1127 | 4 | 309 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 |
| 3ulz_A | 1e-58 | 46 | 1127 | 4 | 309 | BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 |
| Search in ModeBase | ||||||
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 134 | 138 | RKRRR |
| 2 | 371 | 393 | KRRPAREWWKEEYCEELAKKKKK |
| 3 | 389 | 397 | KKKKKKKKK |
| 4 | 391 | 397 | KKKKKKK |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_028063666.1 | 0.0 | receptor-like serine/threonine-protein kinase At4g25390 isoform X1 | ||||
| Refseq | XP_028063667.1 | 0.0 | receptor-like serine/threonine-protein kinase At4g25390 isoform X1 | ||||
| Refseq | XP_028063668.1 | 0.0 | receptor-like serine/threonine-protein kinase At4g25390 isoform X1 | ||||
| Refseq | XP_028063669.1 | 0.0 | receptor-like serine/threonine-protein kinase At4g25390 isoform X2 | ||||
| Swissprot | O64639 | 0.0 | Y2559_ARATH; Receptor-like serine/threonine-protein kinase At2g45590 | ||||
| TrEMBL | A0A2R6RQX4 | 0.0 | A0A2R6RQX4_ACTCH; Receptor-like serine/threonine-protein kinase | ||||
| STRING | PGSC0003DMT400019551 | 0.0 | (Solanum tuberosum) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G25410.1 | 8e-36 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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