PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn159391
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C2H2
Protein Properties Length: 206aa    MW: 24226.1 Da    PI: 6.5354
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn159391genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2156.9e-052342221
                EETTTTEEESSHHHHHHHHH CS
     zf-C2H2  2 kCpdCgksFsrksnLkrHir 21
                 C+ Cg+ F+++ +L++H r
  Achn159391 23 HCSVCGRKFRTSLDLEKHFR 42
                5*****************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.182250IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSAANAGRLD FLERKGAALR TLHCSVCGRK FRTSLDLEKH FRQLRERERQ KKLNRMRSLK  60
RKKRQGYKER FVANNHKYME AMRDLITPKV GNLYEKTRGR YASKEKPLTV EVRIEGKLDT  120
LVRSTEISAP SEREEEEEEE EENWASEEVN HEYDEDGDFL FDVDKEESEK DDVYFWYSEV  180
SWVLQTWTSY SFGSIPCSGT KCEGK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.11e-30C2H2-like zinc finger protein