PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn159441
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HSF
Protein Properties Length: 307aa    MW: 34677 Da    PI: 7.6834
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn159441genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.66.6e-36251172103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++ ++++sw e+ ++fvv+ ++efa+++Lp++Fkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+ll++i+
    Achn159441  25 FLTKTYQLVDDPSSDHIVSWGEDDTTFVVWRPQEFARDLLPNFFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCEIH 112
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
    Achn159441 113 RRKTS 117
                   **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3717109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.0E-5921114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467852.34E-3422114IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004471.0E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.2E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008356Biological Processasymmetric cell division
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MALMMDSCES ILLSLESHKA VPAPFLTKTY QLVDDPSSDH IVSWGEDDTT FVVWRPQEFA  60
RDLLPNFFKH NNFSSFVRQL NTYGFRKIVP DRWEFANEFF KKGEKHLLCE IHRRKTSQPL  120
PPQGTGVNHH FSHPISGGSS FFPYPGGRVS VSPPDSDEQQ SANWCDSPPR MPSAGISVGY  180
GGAVTALSED NERLRRSNNM LMSELAHMRK LYNDIIYFVQ NHVKPVAPSH PYPSSFLMPN  240
SSPLMVQKPV NNLIGFNQYS SPNYKQVLPN EESESNIVRT KLFGRSSASN MCNKRRKEEE  300
SDTATT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-212111717123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00187DAPTransfer from AT1G46264Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0639527e-84AK063952.1 Oryza sativa Japonica Group cDNA clone:001-123-F07, full insert sequence.
GenBankAK0993547e-84AK099354.1 Oryza sativa Japonica Group cDNA clone:J033042P04, full insert sequence.
GenBankAY3444947e-84AY344494.1 Oryza sativa (japonica cultivar-group) heat shock factor RHSF12 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002284836.11e-136PREDICTED: heat stress transcription factor B-4
SwissprotQ9C6351e-109HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2R6RN680.0A0A2R6RN68_ACTCH; Heat stress transcription factor B-4 like
STRINGVIT_18s0001g10380.t011e-136(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27212450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-105heat shock transcription factor B4