PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn162381

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NF-YA

Protein Properties

Length: 148aa MW: 16423.5 Da PI: 10.2617

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn162381	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	93.9	2e-29	54	114	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrk....pylheSRhkhAlrRpRgsgGrF 58 +ep++VNa Qy++Il+RRq+Rak+e+e+k+ +ksrk pylheSRh hAl+R+Rg+gGrF Achn162381 54 EEPVFVNANQYHGILRRRQSRAKAESENKM-IKSRKlnmqPYLHESRHLHALKRARGCGGRF 114 69*************************7.555543333*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	8.4E-32	52	117	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	33.916	53	117	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.9E-25	55	114	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.1E-21	56	78	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.1E-21	91	114	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 148 aa Download sequence Send to blast
MGGQAAYSYP DPYYRSIFAS ATYDAQPYPQ QPMVHFQLMG IQQAGVPLPS DAVEEPVFVN 60 ANQYHGILRR RQSRAKAESE NKMIKSRKLN MQPYLHESRH LHALKRARGC GGRFTNLKKN 120 ENQQKVAASG GKSQANKNDL APSESSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-18	53	122	1	66	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010655736.1	1e-73	PREDICTED: nuclear transcription factor Y subunit A-7
Swissprot	Q84JP1	1e-53	NFYA7_ARATH; Nuclear transcription factor Y subunit A-7
TrEMBL	A0A2R6PYW8	4e-94	A0A2R6PYW8_ACTCH; Nuclear transcription factor Y subunit A-7 like
STRING	VIT_10s0003g04650.t01	6e-73	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6650	23	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30500.2	5e-56	nuclear factor Y, subunit A7

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]