PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn162841
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 174aa    MW: 19611.4 Da    PI: 7.5725
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn162841genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.91e-091563755
                HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 +Er+RR  ++  +++L +l+P+++k ++ ++s    L +A  YI++L+
  Achn162841 15 TAERNRRIYMKGLYFKLTSLIPPRFKSSKDRVSQHNLLDQAATYINQLK 63
                68*********************99**********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508889.172862IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-91175IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.1E-41468IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.8E-71562IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-81571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.97E-41666No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MNKCESSNEK LDLKTAERNR RIYMKGLYFK LTSLIPPRFK SSKDRVSQHN LLDQAATYIN  60
QLKERVDELK ARRAIAMTNT CTNNNTTRDT RMFRSYELPV VELKDLGSSF EVVLITGLER  120
NLMMHEVIGM LEDEGAEVVS ASFSTVGDKV FHTYHAQGIM DSLQLDSSGA ILA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028121201.13e-66transcription factor bHLH162-like isoform X1
TrEMBLA0A2R6QGS41e-100A0A2R6QGS4_ACTCH; Transcription factor like
STRINGVIT_17s0000g08150.t012e-56(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA60831423
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.13e-23bHLH family protein