PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn163111

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 245aa MW: 26957 Da PI: 6.795

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn163111	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.2	0.00026	90	112	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C + F ++ L H++ H Achn163111 90 FSCNYCRRKFYSSQALGGHQNAH 112 89*****************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.96E-6	88	117	No hit	No description
PROSITE profile	PS50157	11.385	90	117	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	92	112	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MKHPSINLES EDDSEVSSQV PTHIPIQEIS PDPSKDSATT SSCLSNPIKH QPDPDHITLD 60 LTLRFDAREV ESKGKGETSN EFATLPPRVF SCNYCRRKFY SSQALGGHQN AHKRERTLAK 120 RAMRMGMLTD RYASLASLPL HGSAFRSLGI EAHASVHQRI LPSTRPFPEV RGGARFEQSY 180 FGSPIFVDDD EAELFWPGSF RQIGEGINSN VGFNSGQSSN INFVAMAPPP RTDNSSSPDL 240 TLKL*

Functional Description ? help Back to Top
Source	Description
UniProt	Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269\|PubMed:24808098}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028080117.1	1e-119	zinc finger protein 4-like
Refseq	XP_028080118.1	1e-119	zinc finger protein 4-like
Refseq	XP_028080119.1	1e-119	zinc finger protein 4-like
Refseq	XP_028080120.1	1e-119	zinc finger protein 4-like
Refseq	XP_028080122.1	1e-119	zinc finger protein 4-like
Refseq	XP_028080123.1	1e-119	zinc finger protein 4-like
Swissprot	Q39263	3e-47	ZFP4_ARATH; Zinc finger protein 4
TrEMBL	A0A2R6P3N5	1e-179	A0A2R6P3N5_ACTCH; Zinc finger protein
STRING	EOY01311	1e-113	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1283	23	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66140.1	1e-49	zinc finger protein 4

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Joseph MP, et al. The Arabidopsis ZINC FINGER PROTEIN3 Interferes with Abscisic Acid and Light Signaling in Seed Germination and Plant Development. Plant Physiol., 2014. 165(3): p. 1203-1220 [PMID:24808098] Li B, et al. Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis. Plant Cell, 2018. 30(1): p. 178-195 [PMID:29317470]