PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn165131
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family WRKY
Protein Properties Length: 437aa    MW: 48062.1 Da    PI: 5.2384
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn165131genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.87e-31207265259
                 --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
        WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+
  Achn165131 207 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRTDPNMLVITYTSEHNHP 265
                 699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.2E-31201267IPR003657WRKY domain
PROSITE profilePS5081132.925201267IPR003657WRKY domain
SuperFamilySSF1182902.48E-26204267IPR003657WRKY domain
SMARTSM007741.4E-37206266IPR003657WRKY domain
PfamPF031069.1E-26208265IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MENYQGDLAD IVRAMSGGRG GGDGGFSGEV PVLEWQFPVD PVNYASEPVD DFGDPFSAMR  60
DPLLHELNMP STGFFSSNKS TIMMTNSIGD TATSFGGRGG GGVDEELKRP CNNIFSSMLQ  120
ISPNANKLHI SPCDSPVGIK NPSLLPNDMI STANTSKNCL VENSGVQISS PQNTGIKRRK  180
NQAKKVVCIP APAPANSRAS TGEVVPSDLW AWRKYGQKPI KGSPYPRGYY RCSSSKGCSA  240
RKQVERSRTD PNMLVITYTS EHNHPWPTQR NALAGSTRSQ PPKNNSGSKN SSSHAQKETT  300
NMKEEHKEKR ENTNNVTSSI PRTTSGGQTV KEEEMELDLI HDKQMLDMDE EEREREREID  360
VKSYRPALPD SNHEDFFADL GEIEEDPLNL LFTQGFSADD QERESNKALD PFTSLFDWTP  420
NNTSNTSFGD QAKRGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B7e-25181268380Disease resistance protein RRS1
5w3x_D7e-25181268380Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195101GGRGGGG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00171DAPTransfer from AT1G30650Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002269170.11e-173PREDICTED: probable WRKY transcription factor 14
TrEMBLA0A2R6Q5J50.0A0A2R6Q5J5_ACTCH; WRKY transcription factor 14
STRINGPOPTR_0011s16050.11e-146(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA67012433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.16e-95WRKY DNA-binding protein 14