PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn165991
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family FAR1
Protein Properties Length: 151aa    MW: 17280 Da    PI: 10.4146
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn165991genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR129.32.9e-093593690
        FAR1 36 skegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90
                +++g++++ + + ++++r +r+  r+gC a++ ++ ++  +k++vt + +eHnH+++
  Achn165991  3 NRQGQTAKAHLErSDRKRVPRPFMRVGCLATFSIRYDRkLKKYVVTYFAKEHNHPFV 59
                6777777766654678888*****************99899*************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.7E-7359IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 151 aa     Download sequence    Send to blast
MINRQGQTAK AHLERSDRKR VPRPFMRVGC LATFSIRYDR KLKKYVVTYF AKEHNHPFVA  60
SQCMPCHRLQ KSVKDPDKAH DQMANPDVGV KTSQMHDAGQ GTFNLNMDQN CKHRAISEVS  120
LESVNTKLIR PGKFKEARCK GMEKVHKDIE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11742RKRVPRPFMRVGCLATFSIRYDRKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028092438.13e-22protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_028095631.19e-22protein FAR1-RELATED SEQUENCE 5-like
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.12e-09FAR1 family protein