PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn166731

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 395aa MW: 44712.1 Da PI: 8.6246

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn166731	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.3	5.1e-56	110	236	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrFhPtdeel+++yL +kv++ +++ ++i++vd++k+ePwdLp+k++ ++kewyfF rd+ky+tg r+nrat++gyWk+tgkdke+++ +g l Achn166731 110 LPPGFRFHPTDEELISYYLSHKVSDFSFTS-RAIADVDLNKCEPWDLPAKASMGDKEWYFFNLRDRKYPTGMRTNRATEAGYWKTTGKDKEIFR-SGVL 206 79***********************999.89***********99999**************************************.999 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrle 129 vg+kktLvfy+grapkgekt+Wvmheyrle Achn166731 207 VGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 236 ****************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-64	102	256	IPR003441	NAC domain
PROSITE profile	PS51005	60.053	110	256	IPR003441	NAC domain
Pfam	PF02365	3.0E-28	111	235	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence Send to blast
MLRRSWFKQL NPSILTVAGF CPNFIRAHDP PVRGDVAGMG ACNGVNLSFL NCFNNASLSL 60 SDKQRLSLSL TDKHQAGFRI CNRFYTHSFF PNIDHNQDRS MEENNNNNNL PPGFRFHPTD 120 EELISYYLSH KVSDFSFTSR AIADVDLNKC EPWDLPAKAS MGDKEWYFFN LRDRKYPTGM 180 RTNRATEAGY WKTTGKDKEI FRSGVLVGMK KTLVFYRGRA PKGEKTNWVM HEYRLEAKLY 240 FKPSKEEWVV CRIFQKSSTT KKPHHQTQSS QPSSPCDTNS VANEFGDIEL PNLNSIANSS 300 SAITEASLQN YNIANNSSMN MNWSSGLLTS NLSMNSLLLR ALQHSSYNQP GEATNIIDYT 360 YMPQGISHFG TDFSANFPAG SSSKEQPFNL ESIW*

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence Send to blast

MLRRSWFKQL NPSILTVAGF CPNFIRAHDP PVRGDVAGMG ACNGVNLSFL NCFNNASLSL  60
SDKQRLSLSL TDKHQAGFRI CNRFYTHSFF PNIDHNQDRS MEENNNNNNL PPGFRFHPTD  120
EELISYYLSH KVSDFSFTSR AIADVDLNKC EPWDLPAKAS MGDKEWYFFN LRDRKYPTGM  180
RTNRATEAGY WKTTGKDKEI FRSGVLVGMK KTLVFYRGRA PKGEKTNWVM HEYRLEAKLY  240
FKPSKEEWVV CRIFQKSSTT KKPHHQTQSS QPSSPCDTNS VANEFGDIEL PNLNSIANSS  300
SAITEASLQN YNIANNSSMN MNWSSGLLTS NLSMNSLLLR ALQHSSYNQP GEATNIIDYT  360
YMPQGISHFG TDFSANFPAG SSSKEQPFNL ESIW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-56	109	262	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-56	109	262	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-56	109	262	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-56	109	262	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	1e-56	109	262	19	174	NAC domain-containing protein 19
3swm_B	1e-56	109	262	19	174	NAC domain-containing protein 19
3swm_C	1e-56	109	262	19	174	NAC domain-containing protein 19
3swm_D	1e-56	109	262	19	174	NAC domain-containing protein 19
3swp_A	1e-56	109	262	19	174	NAC domain-containing protein 19
3swp_B	1e-56	109	262	19	174	NAC domain-containing protein 19
3swp_C	1e-56	109	262	19	174	NAC domain-containing protein 19
3swp_D	1e-56	109	262	19	174	NAC domain-containing protein 19
4dul_A	1e-56	109	262	16	171	NAC domain-containing protein 19
4dul_B	1e-56	109	262	16	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00364	DAP	Transfer from AT3G18400	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed post-transcriptionally by miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808, ECO:0000269\|PubMed:18305205, ECO:0000305\|PubMed:15723790}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028053303.1	1e-139	NAC domain-containing protein 87
Refseq	XP_028053311.1	1e-139	NAC domain-containing protein 87
Swissprot	Q9FLR3	7e-81	NAC79_ARATH; NAC domain-containing protein 79
TrEMBL	A0A2R6PUX8	0.0	A0A2R6PUX8_ACTCH; NAC domain-containing protein
STRING	GLYMA07G10240.1	1e-138	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA152	24	279

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18400.1	1e-100	NAC domain containing protein 58

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Vidal EA,Álvarez JM,Gutiérrez RA Nitrate regulation of AFB3 and NAC4 gene expression in Arabidopsis roots depends on NRT1.1 nitrate transport function. Plant Signal Behav, 2014. 9(3): p. e28501 [PMID:24642706] Lee MH,Jeon HS,Kim HG,Park OK An Arabidopsis NAC transcription factor NAC4 promotes pathogen-induced cell death under negative regulation by microRNA164. New Phytol., 2017. 214(1): p. 343-360 [PMID:28032643]