PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn166931
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ZF-HD
Protein Properties Length: 199aa    MW: 21106.2 Da    PI: 8.3854
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn166931genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer86.82.2e-27862457
  ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrev 57
                  +Y+eCl+NhAaslG++a+DGCgEf+ + +   g   +l+CaACgCHRnFHR+ +
   Achn166931  8 DVYRECLRNHAASLGSYATDGCGEFTLDVTLPpGGGGGLQCAACGCHRNFHRKVT 62
                 58*************************98888899*****************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.2E-23961IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.3E-221060IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152322.0591061IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257745.0E-121060IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.605.1E-2690167IPR009057Homeodomain-like
SuperFamilySSF466891.64E-1392166IPR009057Homeodomain-like
TIGRFAMsTIGR015652.9E-2699165IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MEGDHTNDVY RECLRNHAAS LGSYATDGCG EFTLDVTLPP GGGGGLQCAA CGCHRNFHRK  60
VTGAGRARGS SGGLTTVDYG GGSGMFVEEE SAAASGGGKK RFRTKFTEEQ REKMLEFAEK  120
IGWKMAQRRR DVGSGEDGGD EIERFCRGVG VSRQVFKVWM HNHKNNSSSS TSSSATTTTT  180
NTTTATPNAA SSLTTFTR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A6e-191001701879ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022845031.15e-71zinc-finger homeodomain protein 11-like
SwissprotA2XLF48e-42ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV58e-42ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A2R6PUU01e-143A0A2R6PUU0_ACTCH; Zinc-finger homeodomain protein
STRINGPOPTR_0012s03770.11e-67(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA118652023
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.15e-32homeobox protein 24