PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn167011
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family C3H
Protein Properties Length: 166aa    MW: 18461.4 Da    PI: 9.9984
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn167011genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.12.6e-12327126
                --S---SGGGGTS--TTTTT-SS-SS CS
     zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                +k e Cr+f+r G C+yG+rCkF H+
  Achn167011  3 PKKETCRNFQR-GSCQYGERCKFLHV 27
                699********.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010316.812229IPR000571Zinc finger, CCCH-type
SMARTSM003564.6E-6228IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-6329IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-10327IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-8426IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MPPKKETCRN FQRGSCQYGE RCKFLHVTQQ QPKANVFGFG AQTSSQFQRS NSQHQKPNPF  60
GFGVQGSSQP RGATDFGSKQ NQFKPFENKW TRFSPINTVG SQASRQPDNL PATANHNSPC  120
DIIGDISYEE LRAAAYDDAK RGLSLQSIVR DTAYHISVQS SKWTL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028060199.15e-69zinc finger CCCH domain-containing protein 46-like
SwissprotQ9FWS31e-26C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLA0A2R6S1C42e-97A0A2R6S1C4_ACTCH; Zinc finger CCCH domain-containing protein
STRINGPGSC0003DMT4000075025e-62(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94392022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.16e-29C3H family protein