PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn167981
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family ARF
Protein Properties Length: 997aa    MW: 111213 Da    PI: 6.7961
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn167981genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.11.7e-23116217199
                 EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
          B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                 f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++g+sW++++iyr++++r++lt+GW+ Fv++++L +gD+++F +  +++ +l
  Achn167981 116 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QEIVAKDLHGQSWTFRHIYRGQPKRHLLTTGWSVFVSSKRLFAGDSILFIR--DEKSQL 210
                 99*****************************954.4444.48************************************************4..566667 PP

                 EEEEE-S CS
          B3  93 vvkvfrk 99 
                 +++ +r+
  Achn167981 211 LLGTRRA 217
                 9888886 PP
2Auxin_resp1224.3e-40242324183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                 aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s  rr++Gtv+g+s+ld vrW+nS+Wr+L+
  Achn167981 242 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTVTGISELDAVRWKNSQWRNLQ 324
                 79*******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.62E-44104245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-42108231IPR015300DNA-binding pseudobarrel domain
CDDcd100177.88E-21115208No hitNo description
SMARTSM010192.2E-24116218IPR003340B3 DNA binding domain
PROSITE profilePS5086312.901116218IPR003340B3 DNA binding domain
PfamPF023625.6E-22116217IPR003340B3 DNA binding domain
PfamPF065073.3E-35242324IPR010525Auxin response factor
PfamPF023091.4E-9867956IPR033389AUX/IAA domain
PROSITE profilePS5174525.947870954IPR000270PB1 domain
SuperFamilySSF542773.63E-9874949No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 997 aa     Download sequence    Send to blast
MIDTGERKVI HSELWHACAG PLVSLPPVGS LVVYFPQGHS EQVAASMQKE TDGIPNYPNL  60
PSKLICMLHN VTLHADPETD EVYAQMTLQP VSKYDQEALL LSDMGLKQSR QPAEFFCKTL  120
TASDTSTHGG FSVPRRAAEK IFPPLDFSMQ PPAQEIVAKD LHGQSWTFRH IYRGQPKRHL  180
LTTGWSVFVS SKRLFAGDSI LFIRDEKSQL LLGTRRANRQ QPALSSSVIS SDSMHIGILA  240
AAAHAAANNS PFTIFYNPRA SPSEFVIPLA KYNKAMYTQV SLGMRFRMMF ETEESGVRRY  300
MGTVTGISEL DAVRWKNSQW RNLQVGWDES TAGERPGRVS IWEIEPVVTP FFICPPPFFR  360
PKFPKQPGLP DDGSDMENVF KRGMPWLDDF GIKDASSSLF PGLSLVQWMN MQQNQRFPAA  420
QTGFLQPAGS STPFHSNLSA DDPSKLLNFQ SPALSTNLQF NKANQQQQLQ QQQQQQQQQL  480
QLQQQQQQQQ QQQQQQQQQQ QQQQPQQQKQ QQMLHNRNPI QLTPLPQDLQ YQQQIEQASL  540
LQRPQQHRAP PQQTSLQSLQ SSLSQIPQGQ NTLQQSLSEQ HLQLQLLQKL QQQQQLVSPL  600
SPSLEPQQAH QHNRQSQPLP LSQQQQQQIS GNSFPTSTFM QSTHFAATQI QGQHKPNSGL  660
TDTDAPSCST SPSTNNCRVS PSNFLSRNQQ KPSMLIKDPV VDPATTMVRE LQSKPDIRIK  720
HELPGSKGPE QQKYKVSVAD PFDAASSATS FCLDASGFQQ NFSLPSFSLD GDVQSQSRNN  780
LAFAANFDGM APDALLSRGF DSGKDIQNLL SNYGGTPRDI ETELSTAAIS SQSFGVPNMS  840
FKPGSSTDVA INDAGVLSGG LWANQSQRMR TYTKVQKRGS VGRTIDVTRY KGYDELRHDL  900
ARMFGIEGQL EDSQRTEWKL VYVDHENDIL LVGDDPWEEF VSCVQSIKIL SAAEVQQMSL  960
DGDLGHLPVP KQACSGTDSG NVWRGHYDDN TAASFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-170434544388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC3442770.0KC344277.1 Camellia sinensis cultivar Longjing 43 auxin response factor 5 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_022843346.10.0auxin response factor 19-like
TrEMBLA0A397YE550.0A0A397YE55_BRACM; Auxin response factor
STRINGBra016517.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13022465
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19