PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn168231
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NF-YA
Protein Properties Length: 290aa    MW: 31312.3 Da    PI: 10.3555
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn168231genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA1032.7e-3271127158
   CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                 d p+YVNaKQy++Il+RRq+Rakle+++kl  k+r+pylheSRh+hAl+R RgsgGrF
  Achn168231  71 DGPIYVNAKQYHGILRRRQMRAKLEAQNKL-VKNRRPYLHESRHQHALNRVRGSGGRF 127
                 57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.3E-3769130IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.26270130IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.5E-2773127IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.9E-247395IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068607595IPR018362CCAAT-binding factor, conserved site
PRINTSPR006163.9E-24104127IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 290 aa     Download sequence    Send to blast
MKSVFFTSQP NSVTNPLEID FSQSINHISY PYADPYCGGL FASYGPQAII QPQMIGMAPA  60
RVALPLDLAE DGPIYVNAKQ YHGILRRRQM RAKLEAQNKL VKNRRPYLHE SRHQHALNRV  120
RGSGGRFLST KKLQRADPNP GGRQKGNISE FELHSSETGK CGGGSTTSSF GITSVTNSDT  180
IFQQPDCGFS AISPHPVVRA PVVRVRGSGG RFLSTKKLQR ADPNPGGRQK GNISEFELHS  240
SETGKCGGGS TTSSFGITSV TNSDTIFQQP DCGFSAISPH PVVRAPVVR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A1e-2073132463NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028127110.13e-84nuclear transcription factor Y subunit A-4-like
RefseqXP_028127111.13e-84nuclear transcription factor Y subunit A-4-like
RefseqXP_028127112.13e-84nuclear transcription factor Y subunit A-4-like
SwissprotQ93ZH22e-51NFYA3_ARATH; Nuclear transcription factor Y subunit A-3
TrEMBLA0A2R6QUQ11e-139A0A2R6QUQ1_ACTCH; Nuclear transcription factor Y subunit A-3 like
STRINGVIT_11s0016g01480.t011e-76(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50092338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.12e-46nuclear factor Y, subunit A3