PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn168281
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 163aa    MW: 17851 Da    PI: 8.9465
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn168281genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.59.6e-11534130
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIart 30
                     +++WT eE+e l  +v+++G+g Wk I + 
       Achn168281  5 KQKWTSEEEEALRAGVAKHGTGKWKNIQKD 34
                     79*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.514151IPR017930Myb domain
SuperFamilySSF466896.96E-12256IPR009057Homeodomain-like
SMARTSM007170.0037459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-11550IPR009057Homeodomain-like
PfamPF002491.2E-7533IPR001005SANT/Myb domain
CDDcd116609.94E-18675No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MGNPKQKWTS EEEEALRAGV AKHGTGKWKN IQKDPEFNPF LYSRSNIDLK MNMLQCCVRF  60
KQTIGNCYLD KWRNMSVSAN GQGSREKTRT SKAKANTDAP ATPLPNTQTS ASTTPVANDA  120
STDAIMDDSS KCILDGKAAS KPSFVEIKLP DFEVKNGRDT DS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028074215.13e-68telomere repeat-binding factor 4-like
TrEMBLA0A2R6QUT62e-78A0A2R6QUT6_ACTCH; Telomere repeat-binding factor like
STRINGXP_009757029.16e-56(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA25042355
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.31e-28telomere repeat binding factor 1