PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn168691
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 260aa    MW: 28851.7 Da    PI: 8.0967
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn168691genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.81.3e-17179213135
        GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                 C +C + kTp+WR gp g+ktLCnaCG++y++ +l
  Achn168691 179 CYHCLAEKTPQWRAGPMGPKTLCNACGVRYKSGRL 213
                 *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.5E-14173227IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.807173209IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-14175237No hitNo description
Gene3DG3DSA:3.30.50.105.3E-14176211IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.84E-11178226No hitNo description
PROSITE patternPS003440179204IPR000679Zinc finger, GATA-type
PfamPF003202.4E-15179213IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEAKRFTVDD LLDFTLDVYE EEDDDENKTQ KIPSPSSLES SNPNSHDPDE HGSLDVAEEE  60
LEWLSNKDVF PAVETCLDLL MDNSGIALNH QSPVSVLENS TSTSNSSTIT SSCAVSILVP  120
ACFPVKARSK RRCRRRQMLS DLLSQPLWWG QSKVKNAKPG LARSPPPPPP SATTIGRRCY  180
HCLAEKTPQW RAGPMGPKTL CNACGVRYKS GRLVPEYRPA CSPTFSSKLH SNSHRKVMEM  240
RRQKQMRGMV NEACGYRVG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028113026.11e-89GATA transcription factor 1-like
TrEMBLA0A2R6PX751e-131A0A2R6PX75_ACTCH; GATA transcription factor
STRINGPOPTR_0001s14130.11e-68(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40762445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.18e-46GATA transcription factor 1