PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn168951
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family TALE
Protein Properties Length: 183aa    MW: 21129.9 Da    PI: 10.0847
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn168951genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox30.46.7e-101241592055
                 HHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
    Homeobox  20 eknrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                 +k +yp+++++  LA+++gL++rq+ +WF N+R ++
  Achn168951 124 YKWPYPTEADKITLAASTGLDQRQINNWFINQRKRH 159
                 4679*****************************885 PP
2ELK34.15.9e-1279100122
         ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                 ELK+ LlrKY+++++sLk EFs
  Achn168951  79 ELKDSLLRKYGSHISSLKLEFS 100
                 9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011882.3E-679100IPR005539ELK domain
PfamPF037893.7E-979100IPR005539ELK domain
PROSITE profilePS5121310.2847999IPR005539ELK domain
PROSITE profilePS5007112.89299162IPR001356Homeobox domain
SuperFamilySSF466895.99E-20100171IPR009057Homeodomain-like
SMARTSM003899.1E-14101166IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.0E-28104163IPR009057Homeodomain-like
CDDcd000862.39E-12111163No hitNo description
PfamPF059201.5E-17119158IPR008422Homeobox KN domain
PROSITE patternPS000270137160IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MTRDKKTRVG GGFFTSHLRL LYACNEVWSN SPPLSGRPIK QFPYSLSRMH AYEGAISSDD  60
EFSGLENEGQ EAQTSEDREL KDSLLRKYGS HISSLKLEFS KKKKKGKLPK EARKTLLQWW  120
ELHYKWPYPT EADKITLAAS TGLDQRQINN WFINQRKRHW KPSENMQLAV MGKLSGQFFT  180
DD*
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027100190.14e-64homeobox protein knotted-1-like 6
RefseqXP_027150726.14e-64homeobox protein knotted-1-like 6
SwissprotQ84JS62e-56KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLA0A2R6REQ12e-80A0A2R6REQ1_ACTCH; Homeobox protein knotted-1-like
STRINGEOY005442e-62(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA7532480
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-49KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]