PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn169421
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family NAC
Protein Properties Length: 283aa    MW: 32319.7 Da    PI: 8.9613
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn169421genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM1739.1e-5491341128
         NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                 lppGfrFhPtdeel+++yL+++++++++++ ++i+evdiyk++Pw+Lp+k++ +e+ewyfF++rd+ky++g r+nra  sgyWkatg+dk+++s +++ 
  Achn169421   9 LPPGFRFHPTDEELIMYYLRNQATARPCPV-SIIPEVDIYKFDPWELPEKAEFGENEWYFFTPRDRKYPNGVRPNRASVSGYWKATGTDKAIYS-GSKY 105
                 79****************************.89***************99999*****************************************.999* PP

         NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                 vg+kk Lvfykg+ pkg ktdW+mheyrl
  Achn169421 106 VGVKKALVFYKGKPPKGIKTDWIMHEYRL 134
                 ***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.59E-665161IPR003441NAC domain
PROSITE profilePS5100561.3319161IPR003441NAC domain
PfamPF023651.6E-2610134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MVGKKSSDLP PGFRFHPTDE ELIMYYLRNQ ATARPCPVSI IPEVDIYKFD PWELPEKAEF  60
GENEWYFFTP RDRKYPNGVR PNRASVSGYW KATGTDKAIY SGSKYVGVKK ALVFYKGKPP  120
KGIKTDWIMH EYRLSDSISQ TNKQSGSMRL DDWVLCRIYK KKSTIGRVLD PKVEDLGAQI  180
VTTNDASDSQ MLKIPRICSL SHLWKLDCLG SLPQLLNENS YHPNFDYQTT MGNAGNFSGG  240
IENFKFGDQF PYQYMDSVKF EASHRSNAVN QPIFVNPAFQ FQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-70816314170Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028086269.11e-165NAC domain-containing protein 2-like
SwissprotK4BWV21e-133NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLA0A2R6PBN50.0A0A2R6PBN5_ACTCH; NAC transcription factor
STRINGVIT_01s0026g02710.t011e-139(Vitis vinifera)
STRINGEOY018691e-139(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74624103
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-107NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]