PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn169441
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 243aa    MW: 27385.7 Da    PI: 7.1006
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn169441genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.78.2e-1663108147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg W + Ed +l+++v ++G+ +W++Ia+++  gR++k+c++rw++ 
       Achn169441  63 RGHWRPAEDSKLKELVGLYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 108
                      899*****************************.***********996 PP
2Myb_DNA-binding54.72.3e-17115158146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r+++ +eE+e+l  a++++G++ W+ Iar ++ gRt++ +k++w+ 
       Achn169441 115 RKAFNEEEEERLMAAHQLYGNK-WAMIARLFP-GRTDNAVKNHWHV 158
                      7899******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129416.61258109IPR017930Myb domain
SMARTSM007171.8E-1362111IPR001005SANT/Myb domain
PfamPF002493.0E-1563108IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-2763156IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-2564116IPR009057Homeodomain-like
CDDcd001675.61E-1266107No hitNo description
PROSITE profilePS5129425.129110164IPR017930Myb domain
SMARTSM007178.7E-14114162IPR001005SANT/Myb domain
PfamPF002497.2E-14115157IPR001005SANT/Myb domain
CDDcd001673.54E-10117157No hitNo description
Gene3DG3DSA:1.10.10.601.2E-20117163IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGSLSLTQPS WDFAFISKGE NSNSNESIDL NASLNDDDEE MSANINNLKA TESSSGQSKL  60
CARGHWRPAE DSKLKELVGL YGPQNWNLIA EKLEGRSGKS CRLRWFNQLD PRINRKAFNE  120
EEEERLMAAH QLYGNKWAMI ARLFPGRTDN AVKNHWHVIM ARKYREQSSA FRRRKMAQAL  180
HHTTRSMEEL KTEPPPPPPP QPYCFNFANG FCAQPPLSVF LPGASQEPCD GGYLEAEQQA  240
MG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-32621636107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that involved in boundary specification, meristem initiation and maintenance, and organ patterning. Functions in both lateral organ separation and axillary meristem formation. {ECO:0000269|PubMed:19542355}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028062029.17e-92transcription factor MYB105-like
SwissprotQ9SEZ43e-74MY105_ARATH; Transcription factor MYB105
TrEMBLA0A2R6PBU61e-150A0A2R6PBU6_ACTCH; Transcription factor like
STRINGSolyc05g007870.1.19e-90(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16842470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69560.11e-76myb domain protein 105
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]