PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn170521

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bZIP

Protein Properties

Length: 245aa MW: 27960.3 Da PI: 8.2285

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn170521	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	33.1	1.2e-10	120	157	9	46
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 9 rkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLk 46 r+++NReAAr+sR+RKka++++Le +L + ++L+ Achn170521 120 RLAQNREAARKSRLRKKAYVQQLEHSRMKLIQLEQELQ 157 99**********************87777766665554 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05970	3.1E-36	5	109	IPR010285	DNA helicase Pif1-like
SuperFamily	SSF52540	3.98E-5	48	111	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00338	0.0059	115	177	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.0E-7	120	173	No hit	No description
SuperFamily	SSF57959	4.94E-7	120	163	No hit	No description
PROSITE pattern	PS00036	0	120	134	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.4E-7	120	173	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000723	Biological Process	telomere maintenance
GO:0006281	Biological Process	DNA repair
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003678	Molecular Function	DNA helicase activity
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 245 aa Download sequence Send to blast
MPFGKQSLQA ELFRDTKLII WDEVPMQHRY CVETVDRTLK DICDNINPFR GIVVVLGGDF 60 RQVLPVIPKG VREQIMAASL RRSVLWHDIH VLTLHVNMRL NNTDIENINF AKFCMEAFCR 120 LAQNREAARK SRLRKKAYVQ QLEHSRMKLI QLEQELQRAR QQILGNQLEP LKDQQLMGIC 180 NPQQSSQQAE DALSQGVEAL QQSLVDTLSS NFLGHTGSGN VSDYMEQMAI AMGKLATLEN 240 FLIR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the determination of floral organ number. Acts to determine floral organ patterning by establishing floral organ primordia in specific numbers and positions. Plays a role in regulating stem cell fate by directly controlling AG expression. Binds to the 5'-AAGAAT-3' cis-acting element found in AG promoter. Might represent a target for a post-translational modification by GRXC7/ROXY1. {ECO:0000269\|PubMed:19395638, ECO:0000269\|PubMed:19395639, ECO:0000269\|PubMed:9990857}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028065846.1	4e-55	uncharacterized protein LOC114268810
Swissprot	Q9SX27	2e-30	PAN_ARATH; Transcription factor PERIANTHIA
TrEMBL	A0A3Q8TD58	7e-68	A0A3Q8TD58_ACTDE; Basic leucine zipper protein 1

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA16459	2	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68640.1	2e-31	bZIP family protein

Publications ? help Back to Top
Maier AT,Stehling-Sun S,Offenburger SL,Lohmann JU The bZIP Transcription Factor PERIANTHIA: A Multifunctional Hub for Meristem Control. Front Plant Sci, 2011. 2: p. 79 [PMID:22645551] Chandler JW,Werr W Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation. J. Exp. Bot., 2014. 65(12): p. 3097-110 [PMID:24744428] Wynn AN,Seaman AA,Jones AL,Franks RG Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development. Front Plant Sci, 2014. 5: p. 130 [PMID:24778638] Gutsche N,Zachgo S The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding. PLoS ONE, 2016. 11(4): p. e0153810 [PMID:27128442] de Luis Balaguer MA, et al. Predicting gene regulatory networks by combining spatial and temporal gene expression data in Arabidopsis root stem cells. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(36): p. E7632-E7640 [PMID:28827319]