PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn171151
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 235aa    MW: 25917 Da    PI: 4.123
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn171151genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.91.5e-1019432147
                     TT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding 21 ggtWktIartmgkgRtlkqcksrwqky 47
                      g W++Ia++++ gRt++++k++w+++
       Achn171151 19 LG-WSKIASHLP-GRTDNEIKNHWNTH 43
                     45.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129411.233148IPR017930Myb domain
SuperFamilySSF466891.33E-91753IPR009057Homeodomain-like
PfamPF002493.3E-81843IPR001005SANT/Myb domain
CDDcd001671.02E-72144No hitNo description
Gene3DG3DSA:1.10.10.604.1E-142155IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MACGRSLLTS SVPLPKPGLG WSKIASHLPG RTDNEIKNHW NTHIKKKLKK MGIDPLTHKP  60
LPTTPPRDSQ LQEPPQDPPK DVGLNKDIDT FQSPSIEAQE EDTSPIEGPF YAIEVNNGIC  120
TDEVPIIEPD EINLMPNCVP SSSSSCTSSS SSCGGGDLCN NIIWEDLEFP NFDFFTNMGF  180
WDDIGDDFIS SSLNLFLNGD NSDRNLCVEP PPPPPTQFPI MVLDQEYWKV ELFS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0958317e-34BT095831.1 Soybean clone JCVI-FLGm-19P8 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028102715.18e-43transcription factor MYB20-like
TrEMBLA0A2R6R6271e-153A0A2R6R627_ACTCH; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.18e-21myb domain protein 43