PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn171301
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 198aa    MW: 21480.7 Da    PI: 9.6958
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn171301genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH421.6e-131662354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
         HLH  3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                ++h+e+ErrRR+riN  +++Lr+llP+       K +Ka+ L ++++ +++L
  Achn171301 16 KSHSEAERRRRKRINGHLATLRTLLPHT-----DKTDKASLLAEVIQLLRDL 62
                79*************************7.....6*************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.2941362IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-131570IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.31E-111664No hitNo description
Gene3DG3DSA:4.10.280.104.2E-131670IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-111662IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.4E-101968IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550211.49E-7107174No hitNo description
Gene3DG3DSA:3.30.70.2603.8E-8108168No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MGSRFTPEEK AAAASKSHSE AERRRRKRIN GHLATLRTLL PHTDKTDKAS LLAEVIQLLR  60
DLKNTTAKLT DIGGDSESNQ YHMFPTEIDE LKLCHIEGDP QGPLIKATIC CDDRPELISE  120
VTQVVRAVAG TVVRAEMATV GGRTKSVLWV QVKSSGGGEA LGMLRRALKV VVEDRAALWS  180
GPGLGLPENK RARLSHV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027078146.11e-70transcription factor bHLH30-like
TrEMBLA0A2R6R6401e-141A0A2R6R640_ACTCH; Transcription factor bHLH30 like
STRINGXP_009605433.13e-58(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA72832231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.12e-25bHLH family protein