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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Achn171891 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
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| Family | C3H | ||||||||
| Protein Properties | Length: 283aa MW: 33025.6 Da PI: 7.8291 | ||||||||
| Description | C3H family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-CCCH | 22.1 | 2.7e-07 | 85 | 105 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
Cr f+r G+C++G+ CkF+H+
Achn171891 85 VCRAFQR-GECNRGAGCKFSHD 105
6******.*************7 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF54928 | 7.51E-6 | 24 | 66 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
| Gene3D | G3DSA:3.30.70.330 | 3.2E-4 | 38 | 77 | IPR012677 | Nucleotide-binding alpha-beta plait domain |
| PROSITE profile | PS50103 | 14.831 | 80 | 107 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.5E-4 | 82 | 106 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.79E-5 | 83 | 105 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.5E-5 | 85 | 107 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.6E-5 | 85 | 105 | IPR000571 | Zinc finger, CCCH-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000166 | Molecular Function | nucleotide binding | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 283 aa Download sequence Send to blast |
MNPLTLVKRI QNINSKEVSL GISEDASWHV KYKGSAYVFV GGIPFDLTEG DLLAVFAQVD 60 HVSNYKKKEE EDEETERQKR EARGVCRAFQ RGECNRGAGC KFSHDEQRAA NTGWGPEDSK 120 SSRWGHDRFE GSTKSEKQSG TTNHIPEFTV QEGLESNDKD ARSSRTKGSE IDKESHNKLR 180 ELSSRDHDRR DTDNRLARKK KEMDDKDDYD KRAGERRPRK HDAEPNSRED HDRREDKRSR 240 RHESESNHKE DRGRDRRSDH DRDSSSHRHR RMDEDDYHRS HR* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5z56_Y | 2e-19 | 1 | 65 | 1 | 65 | RNA-binding motif protein, X-linked 2 |
| 5z57_Y | 2e-19 | 1 | 65 | 1 | 65 | RNA-binding motif protein, X-linked 2 |
| 5z58_Y | 2e-19 | 1 | 65 | 1 | 65 | RNA-binding motif protein, X-linked 2 |
| 6ff4_1 | 2e-19 | 1 | 65 | 1 | 65 | RNA-binding motif protein, X-linked 2 |
| 6ff7_1 | 2e-19 | 1 | 65 | 1 | 65 | RNA-binding motif protein, X-linked 2 |
| Search in ModeBase | ||||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_028127453.1 | 1e-125 | zinc finger CCCH domain-containing protein 25-like isoform X2 | ||||
| TrEMBL | A0A2R6QSV4 | 1e-152 | A0A2R6QSV4_ACTCH; Zinc finger CCCH domain-containing protein | ||||
| STRING | VIT_06s0004g06440.t01 | 2e-92 | (Vitis vinifera) | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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