PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn172271
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 291aa    MW: 33871 Da    PI: 6.271
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn172271genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.3e-15855148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +l+ +vk++G ++W+ Ia+  g++R++k+c++rw +yl
       Achn172271  8 KGPWTEHEDVQLLFYVKLFGDRRWDFIAKVSGLKRSGKSCRLRWVNYL 55
                     79********************************************97 PP
2Myb_DNA-binding506.9e-1662106248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      g++T+ E+ l +++  ++G++ W++Iar+++ gRt++++k++w++++
       Achn172271  62 GKMTPHEERLVIELQSKWGNR-WSRIARKLP-GRTDNEIKNYWRTHM 106
                      899******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.709355IPR017930Myb domain
SuperFamilySSF466896.36E-286102IPR009057Homeodomain-like
SMARTSM007172.6E-13757IPR001005SANT/Myb domain
PfamPF002491.7E-13855IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.7E-20962IPR009057Homeodomain-like
CDDcd001671.94E-91055No hitNo description
PROSITE profilePS5129426.04956110IPR017930Myb domain
SMARTSM007171.7E-1560108IPR001005SANT/Myb domain
PfamPF002491.6E-1362105IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-2263109IPR009057Homeodomain-like
CDDcd001676.20E-1163106No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MAQEEMRKGP WTEHEDVQLL FYVKLFGDRR WDFIAKVSGL KRSGKSCRLR WVNYLHPDLK  60
HGKMTPHEER LVIELQSKWG NRWSRIARKL PGRTDNEIKN YWRTHMRKKA QVRKRSAMPP  120
TPSISNISSS SESNNPQVDS MPITETKERS FYDTRTSPIS KRSSLSSNNP PVDSMLSVET  180
KERSFYDTGG LEMMVPWGNK DQEEGESEKG YSMDEIWENI DLFESDTPIG YSEEGCNFSC  240
QTMVSPIWNY CPDLLWMTEE DEESKMSIPH TNEQFFAYYD QIKSSKLFAG *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-2651101105MYB PROTO-ONCOGENE PROTEIN
1h8a_C5e-26511024128MYB TRANSFORMING PROTEIN
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028096805.11e-123transcription factor MYB59-like isoform X1
TrEMBLA0A2R6PQ100.0A0A2R6PQ10_ACTCH; Transcription factor like
STRINGVIT_06s0004g04140.t011e-102(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46130.13e-72myb domain protein 48