PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn172521

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

C2H2

Protein Properties

Length: 153aa MW: 16704.2 Da PI: 10.0594

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn172521	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.0005	38	60	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C++ Fs+ L H +H Achn172521 38 FACKICNREFSTFQALGGHRASH 60 78**********99999998887 PP
2	zf-C2H2	11.8	0.00076	78	100	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C F + L H+r+H Achn172521 78 HECSICRLEFATGQALGGHMRRH 100 78********************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.83E-8	36	100	No hit	No description
Pfam	PF13912	1.2E-11	37	62	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.15	38	60	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.868	38	65	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	40	60	IPR007087	Zinc finger, C2H2
Pfam	PF13912	4.9E-10	77	101	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.13	78	100	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	80	100	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 153 aa Download sequence Send to blast
MTMKRMREDG TVEALAMANC LMLLSKVGKS ATSHDRVFAC KICNREFSTF QALGGHRASH 60 KKPRLGESDG SPAKPKRHEC SICRLEFATG QALGGHMRRH KTATTSGGFK ISKSSSGEVE 120 EEEEEAGPVL KRSNSSKRVL CLDLKIAPWW IA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010043590.1	6e-50	PREDICTED: zinc finger protein ZAT8
TrEMBL	A0A2R6PPY1	1e-108	A0A2R6PPY1_ACTCH; Zinc finger protein
STRING	XP_010043590.1	2e-49	(Eucalyptus grandis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA366	24	150

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28710.1	5e-34	C2H2 family protein