PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn172901
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB
Protein Properties Length: 241aa    MW: 27337.9 Da    PI: 8.0407
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn172901genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding506.8e-161461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd++l+ +++++G+ +W+  ++  g+ R++k+c++rw +yl
       Achn172901 14 KGTWTPEEDLKLKAYITRYGSWNWRQLPKFAGLSRCGKSCRLRWMNYL 61
                     799*******************************************97 PP
2Myb_DNA-binding538e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E+ l+v++++ lG++ W++Ia+ ++ gRt++++k++w+ yl
       Achn172901  67 RGNFSKDEEGLIVKLHESLGNR-WSAIAAQLP-GRTDNEIKNHWHGYL 112
                      89********************.*********.***********9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.8E-23664IPR009057Homeodomain-like
PROSITE profilePS5129415.649961IPR017930Myb domain
SuperFamilySSF466893.52E-2911108IPR009057Homeodomain-like
SMARTSM007179.3E-121363IPR001005SANT/Myb domain
PfamPF002498.2E-141461IPR001005SANT/Myb domain
CDDcd001675.44E-91661No hitNo description
PROSITE profilePS5129426.66862116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2465115IPR009057Homeodomain-like
SMARTSM007171.3E-1466114IPR001005SANT/Myb domain
PfamPF002496.1E-1567112IPR001005SANT/Myb domain
CDDcd001674.48E-1069112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MVRTRCCEKT GLKKGTWTPE EDLKLKAYIT RYGSWNWRQL PKFAGLSRCG KSCRLRWMNY  60
LRPNLKRGNF SKDEEGLIVK LHESLGNRWS AIAAQLPGRT DNEIKNHWHG YLKKQQSQQI  120
SVSQGEKSSS NDGSKCKITR GKKLEIEINP PVNPPPTHEI LESSQFSPPP FSGESSCFAE  180
NDVSPEILSG SFWTEPFLAD KYDTAVPLDT GFFPPYSPFV GEEFLCSSGF YDEFDNVLIW  240
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-25121155107B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cold stress response (PubMed:14675437, PubMed:20807373, PubMed:22246661). Regulates positively the expression of genes involved in reactive oxygen species (ROS) scavenging such as peroxidase and superoxide dismutase during cold stress. Transactivates a complex gene network that have major effects on stress tolerance and panicle development (PubMed:20807373). {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|PubMed:22246661}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold stress. {ECO:0000269|PubMed:14675437, ECO:0000269|PubMed:20807373, ECO:0000269|Ref.2}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028066274.11e-103transcription factor MYB4-like
SwissprotQ7XBH46e-57MYB4_ORYSJ; Transcription factor MYB4
TrEMBLA0A2R6QCB41e-167A0A2R6QCB4_ACTCH; Myb-related protein like
STRINGEOX992626e-81(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.15e-56myb domain protein 15
Publications ? help Back to Top
  1. Park MR, et al.
    Supra-optimal expression of the cold-regulated OsMyb4 transcription factor in transgenic rice changes the complexity of transcriptional network with major effects on stress tolerance and panicle development.
    Plant Cell Environ., 2010. 33(12): p. 2209-30
    [PMID:20807373]
  2. Soltész A, et al.
    The rice Osmyb4 gene enhances tolerance to frost and improves germination under unfavourable conditions in transgenic barley plants.
    J. Appl. Genet., 2012. 53(2): p. 133-43
    [PMID:22246661]