PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn172911
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family MYB_related
Protein Properties Length: 204aa    MW: 23563.1 Da    PI: 4.4893
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn172911genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.38.5e-141455148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l  +v+    + W++Ia +++ gRt++++k++w+++l
       Achn172911 14 KGPWSPEEDDKLRAYVQ----R-WSAIATRLP-GRTDNEIKNYWHTHL 55
                     79**************8....5.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.94E-14564IPR009057Homeodomain-like
PROSITE profilePS5129422.119959IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-201059IPR009057Homeodomain-like
SMARTSM007171.7E-111357IPR001005SANT/Myb domain
PfamPF002492.5E-121455IPR001005SANT/Myb domain
CDDcd001671.78E-111655No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 204 aa     Download sequence    Send to blast
MGRSPSFDKN GRKKGPWSPE EDDKLRAYVQ RWSAIATRLP GRTDNEIKNY WHTHLKKRLM  60
KENGEAIFEP KEQEIEASKS ETNLKQRSNQ ITEFPSENRA ILESAPLSPE LSSSEFSSSL  120
TYDYAVLRDK EWVIEDGNST NSSALLAEAI GNFWTEPFLE DKSFNKNEFS SRMEEGEFFY  180
PDSLYFDDGM DLLYQVLKDF PEM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250|UniProtKB:Q9M2D9}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028066339.11e-41transcription factor MYB14-like
SwissprotQ9FJP23e-14MYB53_ARATH; Transcription factor MYB53
TrEMBLA0A2R6QCA91e-112A0A2R6QCA9_ACTCH; Myb-related protein like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.15e-18myb domain protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]