PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn173641

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

FAR1

Protein Properties

Length: 131aa MW: 14985.5 Da PI: 4.7746

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn173641	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	36.5	1.6e-11	42	124	1	66
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk................tekerrtraetrtgCkakl 66 k+Y++Y+++ GF +r+++s+k +r++ +t+ fvC keg ++ +k +k++r+ ++ ++gCka+l Achn173641 42 KYYEDYGRQNGFWIRTRTSYKGqNRSNDVTSVLFVCAKEGMYVPKAEKdgvegnddrseddkvlPNKRKRSCSTAKCGCKAHL 124 69*************99997567888*********999999999********99899999999******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.7E-9	42	125	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 131 aa Download sequence Send to blast
MEDSFEFDDF EVEDLHTSNN DVEKLEAPSS GMSFETIEEA RKYYEDYGRQ NGFWIRTRTS 60 YKGQNRSNDV TSVLFVCAKE GMYVPKAEKD GVEGNDDRSE DDKVLPNKRK RSCSTAKCGC 120 KAHLWNKCDK *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004289266.1	2e-30	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A2R6R5G6	1e-49	A0A2R6R5G6_ACTCH; Protein FAR1-RELATED SEQUENCE like
STRING	XP_004289266.1	9e-30	(Fragaria vesca)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	2e-08	FAR1-related sequence 7