PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn174081
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family HD-ZIP
Protein Properties Length: 196aa    MW: 21916.6 Da    PI: 8.4865
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn174081genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox41.22.8e-13711012656
                 -HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
    Homeobox  26 saeereeLAkklgLterqVkvWFqNrRakek 56 
                 s+++++eLA+kl+L  rqV vWFqNrRa+ k
  Achn174081  71 SRKQKQELARKLNLRPRQVEVWFQNRRARTK 101
                 789**************************98 PP
2HD-ZIP_I/II93.13.1e-30711362591
  HD-ZIP_I/II  25 eperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  + ++K+elar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
   Achn174081  71 SRKQKQELARKLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLQKELQELK-AL 136
                  4689***********************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003890.00164107IPR001356Homeobox domain
SuperFamilySSF466893.09E-1170111IPR009057Homeodomain-like
PfamPF000469.9E-1171101IPR001356Homeobox domain
PROSITE profilePS5007113.26471103IPR001356Homeobox domain
CDDcd000869.28E-1071104No hitNo description
Gene3DG3DSA:1.10.10.606.1E-1271101IPR009057Homeodomain-like
PROSITE patternPS00027078101IPR017970Homeobox, conserved site
PfamPF021833.1E-10103137IPR003106Leucine zipper, homeobox-associated
SMARTSM003404.4E-25103146IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGSFEPSLTL GLCGETYSQR VAGSELNNKG SNESGELLYR QDSGAESFSN GSVKREREAG  60
SEEGEIERVS SRKQKQELAR KLNLRPRQVE VWFQNRRART KLKQTEVDCE FLKKCCETLT  120
DENRRLQKEL QELKALKLSH PFYMQLPAAT LTMCPSCERI GGGGNGNDNT NKNPFTMAPK  180
PHFFNNPFTN SSAAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
195103RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028109134.11e-92homeobox-leucine zipper protein HAT9-like
SwissprotP466041e-63HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A2R6R5B31e-121A0A2R6R5B3_ACTCH; Homeobox-leucine zipper protein
STRINGVIT_00s0732g00010.t015e-88(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-51HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]