PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn174141
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family bHLH
Protein Properties Length: 367aa    MW: 40031.3 Da    PI: 5.4625
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn174141genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.73.2e-11191236555
                 HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                 h ++Er+RR+++ + f  L  ++P +     kK++K ++L +Av+Y+k+Lq
  Achn174141 191 HIIAERKRREQLSQLFVALSGIVPGL-----KKMDKTSVLGEAVKYLKQLQ 236
                 899***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.507186235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.71E-16187252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.93E-11191240No hitNo description
Gene3DG3DSA:4.10.280.101.0E-14191249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-9191236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-12192241IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 367 aa     Download sequence    Send to blast
MADSPMPWLA ELGMDEPLFP SDIMESFEEE LAAALGEDYQ QHYSFSSESN SSNFPNLIPT  60
SSSTTNLLAS SPTELAKQDG AERPTKHHKP NNTYNSWSST PPTPAIPSID HQATPSGSST  120
RFILSFGNSN LTEIPNVPLG TVSPQDEAVA GVLMAQGSFG NREEGVAKSS TTSQGAKKTS  180
APRPASQTYD HIIAERKRRE QLSQLFVALS GIVPGLKKMD KTSVLGEAVK YLKQLQERVK  240
TLEEQSTKQT MESVVLVKKS QLLLEDEAGS SDDNFVGGAS KPLPEIEARV CNKSVLLRIH  300
CEKHKGVLVK ILSEMENLNL SVINTSVVRF GTLALDITII AEMETEFCLT VKDLVRNLRP  360
TLRHFM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1194199ERKRRE
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011073652.11e-116transcription factor bHLH18-like
SwissprotQ9T0728e-57BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A2R6R5B90.0A0A2R6R5B9_ACTCH; Transcription factor bHLH25 like
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-50bHLH family protein