PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Achn175411
Organism
Actinidia chinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia
Family GATA
Protein Properties Length: 180aa    MW: 19887.2 Da    PI: 10.4106
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Achn175411genomeIKGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.31.4e-206396134
        GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34
                C+ C+ttkTplWR+gp g+k+LCnaCG++yrkk+
  Achn175411 63 CADCKTTKTPLWRSGPVGPKSLCNACGIRYRKKR 96
                ********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004016.7E-1657106IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.91457111IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.09E-1359100No hitNo description
Gene3DG3DSA:3.30.50.101.5E-166199IPR013088Zinc finger, NHR/GATA-type
CDDcd002028.88E-136292No hitNo description
PROSITE patternPS0034406388IPR000679Zinc finger, GATA-type
PfamPF003202.0E-186396IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MVINVGSRIL VDVVCQQIFI QGCFGHFIYL TRIRVFVFVD PATEHFLSES VSEEMMSESK  60
KSCADCKTTK TPLWRSGPVG PKSLCNACGI RYRKKRNEKE KKKEKPATNT SNSGGGGSGK  120
VGNLSEDLRV RLVALGKEVV MLQRRQRSPM KRQRTSRKLG EEEQAAVLLM ALSCGSVFA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143158RRQRSPMKRQRTSRKL
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028086304.17e-52GATA transcription factor 16-like
SwissprotQ9FJ106e-34GAT16_ARATH; GATA transcription factor 16
TrEMBLA0A2R6RD723e-87A0A2R6RD72_ACTCH; GATA transcription factor
STRINGPGSC0003DMT4000637712e-44(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA127501721
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.14e-25GATA transcription factor 16
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]