PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn176031

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

NAC

Protein Properties

Length: 160aa MW: 18639.1 Da PI: 8.0428

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn176031	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	123.9	1.3e-38	9	127	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++Pw+L+ k+ ae ++wyfFs++ +nr+t +gyWk g d++++++ +++ Achn176031 9 LPPGFRFYPTDEELVVHFLHRKAALLPCHP-DVIPDLDLYPYNPWELDGKAMAEGNKWYFFSRKT--------ANRITGKGYWKPLGVDEPIFTSASKK 98 79***********************999.99**********977778899*9974........58******************** PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 vg+kk vfy+ ++ + +kt+W+m+eyrl Achn176031 99 VGMKKYYVFYSCEETEEVKTNWIMQEYRL 127 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-47	7	156	IPR003441	NAC domain
PROSITE profile	PS51005	44.515	9	158	IPR003441	NAC domain
Pfam	PF02365	3.1E-24	10	127	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MGDDNNINLP PGFRFYPTDE ELVVHFLHRK AALLPCHPDV IPDLDLYPYN PWELDGKAMA 60 EGNKWYFFSR KTANRITGKG YWKPLGVDEP IFTSASKKVG MKKYYVFYSC EETEEVKTNW 120 IMQEYRLSES GSSSRSSKRR GNTKVDYSKW VMCRVYEHD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	5e-41	5	157	13	164	NO APICAL MERISTEM PROTEIN
1ut4_B	5e-41	5	157	13	164	NO APICAL MERISTEM PROTEIN
1ut7_A	5e-41	5	157	13	164	NO APICAL MERISTEM PROTEIN
1ut7_B	5e-41	5	157	13	164	NO APICAL MERISTEM PROTEIN
3swm_A	6e-41	5	157	16	167	NAC domain-containing protein 19
3swm_B	6e-41	5	157	16	167	NAC domain-containing protein 19
3swm_C	6e-41	5	157	16	167	NAC domain-containing protein 19
3swm_D	6e-41	5	157	16	167	NAC domain-containing protein 19
3swp_A	6e-41	5	157	16	167	NAC domain-containing protein 19
3swp_B	6e-41	5	157	16	167	NAC domain-containing protein 19
3swp_C	6e-41	5	157	16	167	NAC domain-containing protein 19
3swp_D	6e-41	5	157	16	167	NAC domain-containing protein 19
4dul_A	5e-41	5	157	13	164	NAC domain-containing protein 19
4dul_B	5e-41	5	157	13	164	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_028059124.1	2e-88	NAC domain-containing protein 104-like
Swissprot	Q8GWK6	3e-64	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A2R6Q6D9	1e-115	A0A2R6Q6D9_ACTCH; NAC domain-containing protein
STRING	Gorai.008G014700.1	3e-78	(Gossypium raimondii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3766	24	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	3e-64	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]