PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn176591

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

G2-like

Protein Properties

Length: 195aa MW: 22347.4 Da PI: 8.2425

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn176591	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.5	5.4e-32	44	97	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH++Fv+av++LGG+ kAtPk+il++m+v+gL ++hvkSHLQ+YR+ Achn176591 44 PRLRWTPELHQHFVDAVQHLGGKYKATPKRILQMMSVNGLQISHVKSHLQMYRT 97 8****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.739	40	100	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.0E-28	41	98	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-24	44	98	IPR006447	Myb domain, plants
SuperFamily	SSF46689	6.09E-15	44	97	IPR009057	Homeodomain-like
Pfam	PF00249	3.2E-9	45	96	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 195 aa Download sequence Send to blast
MTPHDQCTVP SIDDDALQAH PLNSEMKKGE KSGSVRRYNK SQLPRLRWTP ELHQHFVDAV 60 QHLGGKYKAT PKRILQMMSV NGLQISHVKS HLQMYRTMKL DRKGKAIHLT NLPMFWVCSP 120 HKMMFSERRA CQHEGKEFQG QVPWRDSSEI TSTRENFCGY VFQDTIGGTL SEMSKEEDVE 180 SQNESCDLSP IFPQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-18	45	99	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-18	45	99	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-18	45	99	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-18	45	99	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-18	45	99	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-18	45	99	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-18	45	99	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-18	45	99	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023876529.1	9e-41	protein PHR1-LIKE 1-like isoform X2
TrEMBL	A0A2R6PU32	1e-125	A0A2R6PU32_ACTCH; Myb family transcription factor
STRING	XP_010272283.1	6e-38	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA9459	13	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	6e-29	G2-like family protein