PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Achn176631

Organism

Actinidia chinensis

Taxonomic ID

3625

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Actinidiaceae; Actinidia

Family

bHLH

Protein Properties

Length: 211aa MW: 22815.8 Da PI: 5.3961

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Achn176631	genome	IKGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	16.4	1.6e-05	87	110	32	55
..TTS-STCHHHHHHHHHHHHHHH CS HLH 32 kapskKlsKaeiLekAveYIksLq 55 ++skK++K++i e A Y+k+Lq Achn176631 87 PGGSKKMDKVSIMEDALAYLKQLQ 110 5789*******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	9.528	59	109	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.8E-7	73	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-7	77	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MDEFDEALGD DSMAPQSENT SREGEKDDDS QESSSSSSES SSSASPPAES TKSALRTRSG 60 HAISKANKRK TCKKLIQQYK ALASIHPGGS KKMDKVSIME DALAYLKQLQ ERVNALEEQA 120 NNTSVAFGPQ TCEKSAPVKI DAIVEGKNVL IRIECVKQKG YITKIVTEIE KLHLTIGSFN 180 SLPFGNNLLA ITISTQALFG LELFILAFDL *

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2R6P2Y3	3e-89	A0A2R6P2Y3_ACTCH; Transcription factor like

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8864	16	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37850.1	2e-19	bHLH family protein